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| | import builtins |
| | import datetime |
| | import os |
| | import time |
| | import json |
| | from collections import defaultdict, deque |
| | from pathlib import Path |
| | |
| |
|
| | import pandas as pd |
| | import torch |
| | import torch.distributed as dist |
| | import wandb |
| | |
| | from torch import inf |
| | import matplotlib.pyplot as plt |
| | from torchvision import transforms |
| | import cv2 |
| | from tqdm import tqdm |
| | from typing import Union, List |
| |
|
| | class SmoothedValue(object): |
| | """Track a series of values and provide access to smoothed values over a |
| | window or the global series average. |
| | """ |
| |
|
| | def __init__(self, window_size=20, fmt=None): |
| | if fmt is None: |
| | fmt = "{median:.4f} ({global_avg:.4f})" |
| | self.deque = deque(maxlen=window_size) |
| | self.total = 0.0 |
| | self.count = 0 |
| | self.fmt = fmt |
| |
|
| | def update(self, value, n=1): |
| | self.deque.append(value) |
| | self.count += n |
| | self.total += value * n |
| |
|
| | def synchronize_between_processes(self): |
| | """ |
| | Warning: does not synchronize the deque! |
| | """ |
| | if not is_dist_avail_and_initialized(): |
| | return |
| | t = torch.tensor([self.count, self.total], dtype=torch.float64, device='cuda') |
| | dist.barrier() |
| | dist.all_reduce(t) |
| | t = t.tolist() |
| | self.count = int(t[0]) |
| | self.total = t[1] |
| |
|
| | @property |
| | def median(self): |
| | d = torch.tensor(list(self.deque)) |
| | return d.median().item() |
| |
|
| | @property |
| | def avg(self): |
| | d = torch.tensor(list(self.deque), dtype=torch.float32) |
| | return d.mean().item() |
| |
|
| | @property |
| | def global_avg(self): |
| | if self.count == 0: |
| | |
| | return 0 |
| | else: |
| | return self.total / self.count |
| | |
| |
|
| | @property |
| | def max(self): |
| | return max(self.deque) |
| |
|
| | @property |
| | def value(self): |
| | return self.deque[-1] |
| |
|
| | def __str__(self): |
| | return self.fmt.format( |
| | median=self.median, |
| | avg=self.avg, |
| | global_avg=self.global_avg, |
| | max=self.max, |
| | value=self.value) |
| |
|
| |
|
| | class MetricLogger(object): |
| | def __init__(self, delimiter="\t"): |
| | self.meters = defaultdict(SmoothedValue) |
| | self.delimiter = delimiter |
| |
|
| | def update(self, **kwargs): |
| | for k, v in kwargs.items(): |
| | if v is None: |
| | continue |
| | if isinstance(v, torch.Tensor): |
| | v = v.item() |
| | assert isinstance(v, (float, int)) |
| | self.meters[k].update(v) |
| |
|
| | def __getattr__(self, attr): |
| | if attr in self.meters: |
| | return self.meters[attr] |
| | if attr in self.__dict__: |
| | return self.__dict__[attr] |
| | raise AttributeError("'{}' object has no attribute '{}'".format( |
| | type(self).__name__, attr)) |
| |
|
| | def __str__(self): |
| | loss_str = [] |
| | for name, meter in self.meters.items(): |
| | loss_str.append( |
| | "{}: {}".format(name, str(meter)) |
| | ) |
| | return self.delimiter.join(loss_str) |
| |
|
| | def synchronize_between_processes(self): |
| | for meter in self.meters.values(): |
| | meter.synchronize_between_processes() |
| |
|
| | def add_meter(self, name, meter): |
| | self.meters[name] = meter |
| |
|
| | def log_every(self, iterable, print_freq, header=None): |
| | i = 0 |
| | if not header: |
| | header = '' |
| | start_time = time.time() |
| | end = time.time() |
| | iter_time = SmoothedValue(fmt='{avg:.4f}') |
| | data_time = SmoothedValue(fmt='{avg:.4f}') |
| | space_fmt = ':' + str(len(str(len(iterable)))) + 'd' |
| | log_msg = [ |
| | header, |
| | '[{0' + space_fmt + '}/{1}]', |
| | 'eta: {eta}', |
| | '{meters}', |
| | 'time: {time}', |
| | 'data: {data}' |
| | ] |
| | if torch.cuda.is_available(): |
| | log_msg.append('max mem: {memory:.0f}') |
| | log_msg = self.delimiter.join(log_msg) |
| | MB = 1024.0 * 1024.0 |
| | for obj in iterable: |
| | data_time.update(time.time() - end) |
| | yield obj |
| | iter_time.update(time.time() - end) |
| | if i % print_freq == 0 or i == len(iterable) - 1: |
| | eta_seconds = iter_time.global_avg * (len(iterable) - i) |
| | eta_string = str(datetime.timedelta(seconds=int(eta_seconds))) |
| | if torch.cuda.is_available(): |
| | print(log_msg.format( |
| | i, len(iterable), eta=eta_string, |
| | meters=str(self), |
| | time=str(iter_time), data=str(data_time), |
| | memory=torch.cuda.max_memory_allocated() / MB)) |
| | else: |
| | print(log_msg.format( |
| | i, len(iterable), eta=eta_string, |
| | meters=str(self), |
| | time=str(iter_time), data=str(data_time))) |
| | i += 1 |
| | end = time.time() |
| | total_time = time.time() - start_time |
| | total_time_str = str(datetime.timedelta(seconds=int(total_time))) |
| | print('{} Total time: {} ({:.4f} s / it)'.format( |
| | header, total_time_str, total_time / len(iterable))) |
| |
|
| |
|
| | def setup_for_distributed(is_master): |
| | """ |
| | This function disables printing when not in master process |
| | """ |
| | builtin_print = builtins.print |
| |
|
| | def print(*args, **kwargs): |
| | force = kwargs.pop('force', False) |
| | force = force or (get_world_size() > 8) |
| | if is_master or force: |
| | now = datetime.datetime.now().time() |
| | builtin_print('[{}] '.format(now), end='') |
| | builtin_print(*args, **kwargs) |
| |
|
| | builtins.print = print |
| |
|
| |
|
| | def is_dist_avail_and_initialized(): |
| | if not dist.is_available(): |
| | return False |
| | if not dist.is_initialized(): |
| | return False |
| | return True |
| |
|
| |
|
| | def get_world_size(): |
| | if not is_dist_avail_and_initialized(): |
| | return 1 |
| | return dist.get_world_size() |
| |
|
| |
|
| | def get_rank(): |
| | if not is_dist_avail_and_initialized(): |
| | return 0 |
| | return dist.get_rank() |
| |
|
| |
|
| | def is_main_process(): |
| | return get_rank() == 0 |
| |
|
| |
|
| | def save_on_master(*args, **kwargs): |
| | if is_main_process(): |
| | torch.save(*args, **kwargs) |
| |
|
| |
|
| | def init_distributed_mode(args): |
| | if args.dist_on_itp: |
| | args.rank = int(os.environ['OMPI_COMM_WORLD_RANK']) |
| | args.world_size = int(os.environ['OMPI_COMM_WORLD_SIZE']) |
| | args.gpu = int(os.environ['OMPI_COMM_WORLD_LOCAL_RANK']) |
| | args.dist_url = "tcp://%s:%s" % (os.environ['MASTER_ADDR'], os.environ['MASTER_PORT']) |
| | os.environ['LOCAL_RANK'] = str(args.gpu) |
| | os.environ['RANK'] = str(args.rank) |
| | os.environ['WORLD_SIZE'] = str(args.world_size) |
| | |
| | elif 'RANK' in os.environ and 'WORLD_SIZE' in os.environ: |
| | args.rank = int(os.environ["RANK"]) |
| | args.world_size = int(os.environ['WORLD_SIZE']) |
| | args.gpu = int(os.environ['LOCAL_RANK']) |
| | elif 'SLURM_PROCID' in os.environ: |
| | args.rank = int(os.environ['SLURM_PROCID']) |
| | args.gpu = args.rank % torch.cuda.device_count() |
| | else: |
| | print('Not using distributed mode') |
| | setup_for_distributed(is_master=True) |
| | args.distributed = False |
| | return |
| |
|
| | args.distributed = True |
| |
|
| | torch.cuda.set_device(args.gpu) |
| | args.dist_backend = 'nccl' |
| | print('| distributed init (rank {}): {}, gpu {}'.format( |
| | args.rank, args.dist_url, args.gpu), flush=True) |
| | torch.distributed.init_process_group(backend=args.dist_backend, init_method=args.dist_url, |
| | world_size=args.world_size, rank=args.rank) |
| | torch.distributed.barrier() |
| | setup_for_distributed(args.rank == 0) |
| |
|
| |
|
| | class NativeScalerWithGradNormCount: |
| | state_dict_key = "amp_scaler" |
| |
|
| | def __init__(self): |
| | self._scaler = torch.cuda.amp.GradScaler() |
| |
|
| | def __call__(self, loss, optimizer, clip_grad=None, parameters=None, create_graph=False, update_grad=True): |
| | self._scaler.scale(loss).backward(create_graph=create_graph) |
| | if update_grad: |
| | if clip_grad is not None: |
| | assert parameters is not None |
| | self._scaler.unscale_(optimizer) |
| | norm = torch.nn.utils.clip_grad_norm_(parameters, clip_grad) |
| | else: |
| | self._scaler.unscale_(optimizer) |
| | norm = get_grad_norm_(parameters) |
| | self._scaler.step(optimizer) |
| | self._scaler.update() |
| | else: |
| | norm = None |
| | return norm |
| |
|
| | def state_dict(self): |
| | return self._scaler.state_dict() |
| |
|
| | def load_state_dict(self, state_dict): |
| | self._scaler.load_state_dict(state_dict) |
| |
|
| |
|
| | def get_grad_norm_(parameters, norm_type: float = 2.0) -> torch.Tensor: |
| | if isinstance(parameters, torch.Tensor): |
| | parameters = [parameters] |
| | parameters = [p for p in parameters if p.grad is not None] |
| | norm_type = float(norm_type) |
| | if len(parameters) == 0: |
| | return torch.tensor(0.) |
| | device = parameters[0].grad.device |
| | if norm_type == inf: |
| | total_norm = max(p.grad.detach().abs().max().to(device) for p in parameters) |
| | else: |
| | total_norm = torch.norm(torch.stack([torch.norm(p.grad.detach(), norm_type).to(device) for p in parameters]), norm_type) |
| | return total_norm |
| |
|
| |
|
| | def save_model(args, epoch, model, model_without_ddp, optimizer, loss_scaler, suffix="", upload=True): |
| | if suffix: |
| | suffix = f"__{suffix}" |
| | output_dir = Path(args.output_dir) |
| | ckpt_name = f"checkpoint{suffix}.pth" |
| | if loss_scaler is not None: |
| | checkpoint_paths = [output_dir / ckpt_name] |
| | for checkpoint_path in checkpoint_paths: |
| | to_save = { |
| | 'model': model_without_ddp.state_dict(), |
| | 'optimizer': optimizer.state_dict(), |
| | 'epoch': epoch, |
| | 'scaler': loss_scaler.state_dict(), |
| | 'args': args, |
| | } |
| | save_on_master(to_save, checkpoint_path) |
| | if upload and is_main_process(): |
| | log_wandb_model(f"checkpoint{suffix}", checkpoint_path, epoch) |
| | print("checkpoint sent to W&B (if)") |
| | else: |
| | client_state = {'epoch': epoch} |
| | model.save_checkpoint(save_dir=args.output_dir, tag=ckpt_name, client_state=client_state) |
| | if upload and is_main_process(): |
| | log_wandb_model(f"checkpoint{suffix}", output_dir / ckpt_name, epoch) |
| | print("checkpoint sent to W&B (else)") |
| |
|
| |
|
| | def log_wandb_model(title, path, epoch): |
| | artifact = wandb.Artifact(title, type="model") |
| | artifact.add_file(path) |
| | artifact.metadata["epoch"] = epoch |
| | wandb.log_artifact(artifact_or_path=artifact, name=title) |
| |
|
| |
|
| | def load_model(args, model_without_ddp, optimizer, loss_scaler): |
| | if args.resume: |
| | if args.resume.startswith('https'): |
| | checkpoint = torch.hub.load_state_dict_from_url( |
| | args.resume, map_location='cpu', check_hash=True) |
| | else: |
| | checkpoint = torch.load(args.resume, map_location='cpu') |
| |
|
| | if 'pos_embed' in checkpoint['model'] and checkpoint['model']['pos_embed'].shape != model_without_ddp.state_dict()['pos_embed'].shape: |
| | print(f"Removing key pos_embed from pretrained checkpoint") |
| | del checkpoint['model']['pos_embed'] |
| |
|
| | if 'decoder_pos_embed' in checkpoint['model'] and checkpoint['model']['decoder_pos_embed'].shape != model_without_ddp.state_dict()['decoder_pos_embed'].shape: |
| | print(f"Removing key decoder_pos_embed from pretrained checkpoint") |
| | del checkpoint['model']['decoder_pos_embed'] |
| |
|
| | model_without_ddp.load_state_dict(checkpoint['model'], strict=False) |
| | print("Resume checkpoint %s" % args.resume) |
| | if 'optimizer' in checkpoint and 'epoch' in checkpoint and not (hasattr(args, 'eval') and args.eval): |
| | optimizer.load_state_dict(checkpoint['optimizer']) |
| | args.start_epoch = checkpoint['epoch'] + 1 |
| | if 'scaler' in checkpoint: |
| | loss_scaler.load_state_dict(checkpoint['scaler']) |
| | print("With optim & sched!") |
| |
|
| | def load_model_FSC(args, model_without_ddp): |
| | if args.resume: |
| | if args.resume.startswith('https'): |
| | checkpoint = torch.hub.load_state_dict_from_url( |
| | args.resume, map_location='cpu', check_hash=True) |
| | else: |
| | checkpoint = torch.load(args.resume, map_location='cpu') |
| |
|
| | if 'pos_embed' in checkpoint['model'] and checkpoint['model']['pos_embed'].shape != model_without_ddp.state_dict()['pos_embed'].shape: |
| | print(f"Removing key pos_embed from pretrained checkpoint") |
| | del checkpoint['model']['pos_embed'] |
| |
|
| | model_without_ddp.load_state_dict(checkpoint['model'], strict=False) |
| | print(f"Resume checkpoint {args.resume} ({checkpoint['epoch']})") |
| |
|
| | def load_model_FSC1(args, model_without_ddp): |
| | if args.resume: |
| | if args.resume.startswith('https'): |
| | checkpoint = torch.hub.load_state_dict_from_url( |
| | args.resume, map_location='cpu', check_hash=True) |
| | else: |
| | checkpoint = torch.load(args.resume, map_location='cpu') |
| | |
| | |
| | checkpoint1 = torch.load('./output_abnopre_dir/checkpoint-6657.pth', map_location='cpu') |
| |
|
| | if 'pos_embed' in checkpoint['model'] and checkpoint['model']['pos_embed'].shape != model_without_ddp.state_dict()['pos_embed'].shape: |
| | print(f"Removing key pos_embed from pretrained checkpoint") |
| | del checkpoint['model']['pos_embed'] |
| |
|
| | del checkpoint1['cls_token'],checkpoint1['pos_embed'] |
| |
|
| | model_without_ddp.load_state_dict(checkpoint['model'], strict=False) |
| | model_without_ddp.load_state_dict(checkpoint1, strict=False) |
| | print("Resume checkpoint %s" % args.resume) |
| |
|
| |
|
| | def load_model_FSC_full(args, model_without_ddp, optimizer, loss_scaler): |
| | if args.resume: |
| | if args.resume.startswith('https'): |
| | checkpoint = torch.hub.load_state_dict_from_url( |
| | args.resume, map_location='cpu', check_hash=True) |
| | else: |
| | checkpoint = torch.load(args.resume, map_location='cpu') |
| |
|
| | if 'pos_embed' in checkpoint['model'] and checkpoint['model']['pos_embed'].shape != \ |
| | model_without_ddp.state_dict()['pos_embed'].shape: |
| | print(f"Removing key pos_embed from pretrained checkpoint") |
| | del checkpoint['model']['pos_embed'] |
| |
|
| | model_without_ddp.load_state_dict(checkpoint['model'], strict=False) |
| | print("Resume checkpoint %s" % args.resume) |
| |
|
| | if 'optimizer' in checkpoint and 'epoch' in checkpoint and args.do_resume: |
| | optimizer.load_state_dict(checkpoint['optimizer']) |
| | args.start_epoch = checkpoint['epoch'] + 1 |
| | if 'scaler' in checkpoint: |
| | loss_scaler.load_state_dict(checkpoint['scaler']) |
| | print("With optim & scheduler!") |
| |
|
| |
|
| | def all_reduce_mean(x): |
| | world_size = get_world_size() |
| | if world_size > 1: |
| | x_reduce = torch.tensor(x).cuda() |
| | dist.all_reduce(x_reduce) |
| | x_reduce /= world_size |
| | return x_reduce.item() |
| | else: |
| | return x |
| |
|
| |
|
| | def plot_counts(res_csv: Union[str, List[str]], output_dir: str, suffix: str = "", smooth: bool = False): |
| | if suffix: |
| | suffix = f"_{suffix}" |
| | if smooth: |
| | suffix = f"_smooth{suffix}" |
| | if type(res_csv) == str: |
| | res_csv = [res_csv] |
| |
|
| | plt.figure(figsize=(15, 5)) |
| |
|
| | for res in res_csv: |
| | name = Path(res).parent.name |
| | df = pd.read_csv(res) |
| | print(df) |
| |
|
| | df.sort_values(by="name", inplace=True) |
| | df.reset_index(drop=True, inplace=True) |
| | df.index += 1 |
| | print(df) |
| |
|
| | if smooth: |
| | time_arr = df.index[5:-5] |
| | smooth_pred_mean = df['prediction'].iloc[5:-5].rolling(25).mean() |
| | smooth_pred_std = df['prediction'].iloc[5:-5].rolling(25).std() |
| | plt.plot(time_arr, smooth_pred_mean, label=name) |
| | plt.fill_between(time_arr, smooth_pred_mean + smooth_pred_std, smooth_pred_mean - smooth_pred_std, alpha=.2) |
| | plt.xlabel('Frame') |
| | plt.ylabel('Count') |
| | else: |
| | plt.plot(df.index, df['prediction'], label=name) |
| |
|
| | plt.legend() |
| | plt.savefig(os.path.join(output_dir, f'counts{suffix}.png'), dpi=300) |
| |
|
| |
|
| | def write_zeroshot_annotations(p: Path): |
| | with open(p / 'annotations.json', 'a') as split: |
| | split.write('{\n') |
| | for img in p.iterdir(): |
| | if img.is_file(): |
| | split.write(f' "{img.name}": {{\n' \ |
| | ' "H": 960,\n' \ |
| | ' "W": 1280,\n' \ |
| | ' "box_examples_coordinates": [],\n' \ |
| | ' "points": []\n' \ |
| | ' },\n') |
| | split.write("}") |
| |
|
| | with open(p / 'split.json', 'a') as split: |
| | split.write('{\n "test":\n [\n') |
| | for img in p.iterdir(): |
| | if img.is_file(): |
| | split.write(f' "{img.name}",\n') |
| | split.write(" ]\n}") |
| |
|
| |
|
| | def make_grid(imgs, h, w): |
| | assert len(imgs) == 9 |
| | rows = [] |
| | for i in range(0, 9, 3): |
| | row = torch.cat((imgs[i], imgs[i + 1], imgs[i + 2]), -1) |
| | rows += [row] |
| | grid = torch.cat((rows[0], rows[1], rows[2]), 0) |
| | grid = transforms.Resize((h, w))(grid.unsqueeze(0)) |
| | return grid.squeeze(0) |
| |
|
| |
|
| | def min_max(t): |
| | t_shape = t.shape |
| | t = t.view(t_shape[0], -1) |
| | t -= t.min(1, keepdim=True)[0] |
| | t /= t.max(1, keepdim=True)[0] |
| | t = t.view(*t_shape) |
| | return t |
| |
|
| |
|
| | def min_max_np(v, new_min=0, new_max=1): |
| | v_min, v_max = v.min(), v.max() |
| | return (v - v_min) / (v_max - v_min) * (new_max - new_min) + new_min |
| |
|
| |
|
| | def get_box_map(sample, pos, device, external=False): |
| | box_map = torch.zeros([sample.shape[1], sample.shape[2]], device=device) |
| | if external is False: |
| | for rect in pos: |
| | for i in range(rect[2] - rect[0]): |
| | box_map[min(rect[0] + i, sample.shape[1] - 1), min(rect[1], sample.shape[2] - 1)] = 10 |
| | box_map[min(rect[0] + i, sample.shape[1] - 1), min(rect[3], sample.shape[2] - 1)] = 10 |
| | for i in range(rect[3] - rect[1]): |
| | box_map[min(rect[0], sample.shape[1] - 1), min(rect[1] + i, sample.shape[2] - 1)] = 10 |
| | box_map[min(rect[2], sample.shape[1] - 1), min(rect[1] + i, sample.shape[2] - 1)] = 10 |
| | box_map = box_map.unsqueeze(0).repeat(3, 1, 1) |
| | return box_map |
| |
|
| |
|
| | timerfunc = time.perf_counter |
| |
|
| | class measure_time(object): |
| | def __enter__(self): |
| | self.start = timerfunc() |
| | return self |
| |
|
| | def __exit__(self, typ, value, traceback): |
| | self.duration = timerfunc() - self.start |
| |
|
| | def __add__(self, other): |
| | return self.duration + other.duration |
| |
|
| | def __sub__(self, other): |
| | return self.duration - other.duration |
| | |
| | def __str__(self): |
| | return str(self.duration) |
| |
|
| |
|
| | def log_test_results(test_dir): |
| | test_dir = Path(test_dir) |
| | logs = [] |
| | for d in test_dir.iterdir(): |
| | if d.is_dir() and (d / "log.txt").exists(): |
| | print(d.name) |
| | with open(d / "log.txt") as f: |
| | last = f.readlines()[-1] |
| | j = json.loads(last) |
| | j['name'] = d.name |
| | logs.append(j) |
| | df = pd.DataFrame(logs) |
| |
|
| | df.sort_values('name', inplace=True, ignore_index=True) |
| | cols = list(df.columns) |
| | cols = cols[-1:] + cols[:-1] |
| | df = df[cols] |
| |
|
| | df.to_csv(test_dir / "logs.csv", index=False) |
| |
|
| |
|
| | COLORS = { |
| | 'muted blue': '#1f77b4', |
| | 'safety orange': '#ff7f0e', |
| | 'cooked asparagus green': '#2ca02c', |
| | 'brick red': '#d62728', |
| | 'muted purple': '#9467bd', |
| | 'chestnut brown': '#8c564b', |
| | 'raspberry yogurt pink': '#e377c2', |
| | 'middle gray': '#7f7f7f', |
| | 'curry yellow-green': '#bcbd22', |
| | 'blue-teal': '#17becf', |
| | 'muted blue light': '#419ede', |
| | 'safety orange light': '#ffa85b', |
| | 'cooked asparagus green light': '#4bce4b', |
| | 'brick red light': '#e36667' |
| | } |
| |
|
| |
|
| | def plot_test_results(test_dir): |
| | import plotly.graph_objects as go |
| |
|
| | test_dir = Path(test_dir) |
| | df = pd.read_csv(test_dir / "logs.csv") |
| | df.sort_values('name', inplace=True) |
| |
|
| | fig = go.Figure() |
| | fig.add_trace(go.Scatter(x=df['name'], y=df['MAE'], line_color=COLORS['muted blue'], |
| | mode='lines', name='MAE')) |
| | fig.add_trace(go.Scatter(x=df['name'], y=df['RMSE'], line_color=COLORS['safety orange'], |
| | mode='lines', name='RMSE')) |
| | fig.add_trace(go.Scatter(x=df['name'], y=df['NAE'], line_color=COLORS['cooked asparagus green'], |
| | mode='lines', name='NAE')) |
| |
|
| | fig.update_yaxes(type="log") |
| | fig.write_image(test_dir / "plot.jpeg", scale=4) |
| | fig.write_html(test_dir / "plot.html", auto_open=False) |
| |
|
| |
|
| | def frames2vid(input_dir: str, output_file: str, pattern: str, fps: int, h=720, w=1280): |
| | input_dir = Path(input_dir) |
| | video_file = None |
| | files = sorted(input_dir.glob(pattern)) |
| | video_file = cv2.VideoWriter(output_file, cv2.VideoWriter_fourcc(*'mp4v'), fps, (w, h)) |
| | for img in tqdm(files, total=len(files)): |
| | frame = cv2.imread(str(img)) |
| | frame = cv2.resize(frame, (w, h)) |
| | video_file.write(frame) |
| |
|
| | video_file.release() |
| |
|