| { |
| "_name_or_path": "michiyasunaga/BioLinkBERT-large", |
| "architectures": [ |
| "BioNExtTaggerModel" |
| ], |
| "args_random_seed": 42, |
| "attention_probs_dropout_prob": 0.1, |
| "augmentation": "unk", |
| "auto_map": { |
| "AutoConfig": "configuration_bionexttager.BioNExtTaggerConfig", |
| "AutoModel": "modeling_bionexttagger.BioNExtTaggerModel" |
| }, |
| "classifier_dropout": null, |
| "context_size": 2, |
| "crf_reduction": "mean", |
| "freeze": false, |
| "gradient_checkpointing": false, |
| "hidden_act": "gelu", |
| "hidden_dropout_prob": 0.1, |
| "hidden_size": 1024, |
| "id2label": { |
| "0": "O", |
| "1": "B-GeneOrGeneProduct", |
| "2": "I-GeneOrGeneProduct", |
| "3": "B-DiseaseOrPhenotypicFeature", |
| "4": "I-DiseaseOrPhenotypicFeature", |
| "5": "B-ChemicalEntity", |
| "6": "I-ChemicalEntity", |
| "7": "B-SequenceVariant", |
| "8": "I-SequenceVariant", |
| "9": "B-OrganismTaxon", |
| "10": "I-OrganismTaxon", |
| "11": "B-CellLine", |
| "12": "I-CellLine" |
| }, |
| "initializer_range": 0.02, |
| "intermediate_size": 4096, |
| "label2id": { |
| "B-CellLine": 11, |
| "B-ChemicalEntity": 5, |
| "B-DiseaseOrPhenotypicFeature": 3, |
| "B-GeneOrGeneProduct": 1, |
| "B-OrganismTaxon": 9, |
| "B-SequenceVariant": 7, |
| "I-CellLine": 12, |
| "I-ChemicalEntity": 6, |
| "I-DiseaseOrPhenotypicFeature": 4, |
| "I-GeneOrGeneProduct": 2, |
| "I-OrganismTaxon": 10, |
| "I-SequenceVariant": 8, |
| "O": 0 |
| }, |
| "layer_norm_eps": 1e-12, |
| "max_position_embeddings": 512, |
| "model_type": "crf-tagger", |
| "model_type_arch": "dense", |
| "num_attention_heads": 16, |
| "num_hidden_layers": 24, |
| "p_augmentation": 0.5, |
| "pad_token_id": 0, |
| "percentage_tags": 0.75, |
| "position_embedding_type": "absolute", |
| "torch_dtype": "float32", |
| "transformers_version": "4.37.2", |
| "type_vocab_size": 2, |
| "use_cache": true, |
| "version": "0.1.2", |
| "vocab_size": 28895 |
| } |
|
|
