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value | code stringlengths 75 19.8k | code_tokens list | docstring stringlengths 3 17.3k | docstring_tokens list | sha stringlengths 40 40 | url stringlengths 87 242 |
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251,300 | edeposit/edeposit.amqp.storage | src/edeposit/amqp/storage/web_tools.py | compose_tree_path | def compose_tree_path(tree, issn=False):
"""
Compose absolute path for given `tree`.
Args:
pub (obj): :class:`.Tree` instance.
issn (bool, default False): Compose URL using ISSN.
Returns:
str: Absolute path of the tree, without server's address and protocol.
"""
if issn... | python | def compose_tree_path(tree, issn=False):
"""
Compose absolute path for given `tree`.
Args:
pub (obj): :class:`.Tree` instance.
issn (bool, default False): Compose URL using ISSN.
Returns:
str: Absolute path of the tree, without server's address and protocol.
"""
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251,301 | edeposit/edeposit.amqp.storage | src/edeposit/amqp/storage/web_tools.py | compose_full_url | def compose_full_url(pub, uuid_url=False):
"""
Compose full url for given `pub`, with protocol, server's address and port.
Args:
pub (obj): :class:`.DBPublication` instance.
uuid_url (bool, default False): Compose URL using UUID.
Returns:
str: Absolute url of the publication.
... | python | def compose_full_url(pub, uuid_url=False):
"""
Compose full url for given `pub`, with protocol, server's address and port.
Args:
pub (obj): :class:`.DBPublication` instance.
uuid_url (bool, default False): Compose URL using UUID.
Returns:
str: Absolute url of the publication.
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251,302 | edeposit/edeposit.amqp.storage | src/edeposit/amqp/storage/web_tools.py | compose_tree_url | def compose_tree_url(tree, issn_url=False):
"""
Compose full url for given `tree`, with protocol, server's address and
port.
Args:
tree (obj): :class:`.Tree` instance.
issn_url (bool, default False): Compose URL using ISSN.
Returns:
str: URL of the tree
"""
url = co... | python | def compose_tree_url(tree, issn_url=False):
"""
Compose full url for given `tree`, with protocol, server's address and
port.
Args:
tree (obj): :class:`.Tree` instance.
issn_url (bool, default False): Compose URL using ISSN.
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251,303 | eallik/spinoff | spinoff/util/meta.py | profile | def profile(func):
"""
Simple profile decorator, monitors method execution time
"""
@inlineCallbacks
def callme(*args, **kwargs):
start = time.time()
ret = yield func(*args, **kwargs)
time_to_execute = time.time() - start
log.msg('%s executed in %.3f seconds' % (func.... | python | def profile(func):
"""
Simple profile decorator, monitors method execution time
"""
@inlineCallbacks
def callme(*args, **kwargs):
start = time.time()
ret = yield func(*args, **kwargs)
time_to_execute = time.time() - start
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251,304 | stain/forgetSQL | lib/forgetSQL.py | prepareClasses | def prepareClasses(locals):
"""Fix _userClasses and some stuff in classes.
Traverses locals, which is a locals() dictionary from
the namespace where Forgetter subclasses have been
defined, and resolves names in _userClasses to real
class-references.
Normally you would call forgettSQL.prepareCl... | python | def prepareClasses(locals):
"""Fix _userClasses and some stuff in classes.
Traverses locals, which is a locals() dictionary from
the namespace where Forgetter subclasses have been
defined, and resolves names in _userClasses to real
class-references.
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251,305 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._setID | def _setID(self, id):
"""Set the ID, ie. the values for primary keys.
id can be either a list, following the
_sqlPrimary, or some other type, that will be set
as the singleton ID (requires 1-length sqlPrimary).
"""
if type(id) in (types.ListType, types.TupleType):
... | python | def _setID(self, id):
"""Set the ID, ie. the values for primary keys.
id can be either a list, following the
_sqlPrimary, or some other type, that will be set
as the singleton ID (requires 1-length sqlPrimary).
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251,306 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._getID | def _getID(self):
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id = []
for key in self._sqlPrimary:
value = self.__dict__[key]
if isinstance(value, Forgetter):
# It's another object, we store only the ID
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... | python | def _getID(self):
"""Get the ID values as a tuple annotated by sqlPrimary"""
id = []
for key in self._sqlPrimary:
value = self.__dict__[key]
if isinstance(value, Forgetter):
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251,307 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._resetID | def _resetID(self):
"""Reset all ID fields."""
# Dirty.. .=))
self._setID((None,) * len(self._sqlPrimary))
self._new = True | python | def _resetID(self):
"""Reset all ID fields."""
# Dirty.. .=))
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251,308 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._checkTable | def _checkTable(cls, field):
"""Split a field from _sqlFields into table, column.
Registers the table in cls._tables, and returns a fully
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"""
# Get table part
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... | python | def _checkTable(cls, field):
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Registers the table in cls._tables, and returns a fully
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251,309 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.reset | def reset(self):
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Note: Forgets changes you have made not saved to database!
(Remember: Others might reference the object already, expecting
something else!) Override this method if you add properties not
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251,310 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.load | def load(self, id=None):
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self._up... | python | def load(self, id=None):
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251,311 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.save | def save(self):
"""Save to database if anything has changed since last load"""
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# Don't save if we have not loaded existing data!
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"""Save to database if anything has changed since last load"""
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251,312 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.delete | def delete(self):
"""Mark this object for deletion in the database.
The object will then be reset and ready for use
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"""
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curs = self.cursor()
curs.execute(sql, self._getID())
curs.close()
se... | python | def delete(self):
"""Mark this object for deletion in the database.
The object will then be reset and ready for use
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"""
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curs.execute(sql, self._getID())
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251,313 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._nextSequence | def _nextSequence(cls, name=None):
"""Return a new sequence number for insertion in self._sqlTable.
Note that if your sequences are not named
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key 'john_id', sequence name blapp_john_id_seq) you must give
the full se... | python | def _nextSequence(cls, name=None):
"""Return a new sequence number for insertion in self._sqlTable.
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251,314 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._loadFromRow | def _loadFromRow(self, result, fields, cursor):
"""Load from a database row, described by fields.
``fields`` should be the attribute names that
will be set. Note that userclasses will be
created (but not loaded).
"""
position = 0
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v... | python | def _loadFromRow(self, result, fields, cursor):
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251,315 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._loadDB | def _loadDB(self):
"""Connect to the database to load myself"""
if not self._validID():
raise NotFound, self._getID()
(sql, fields) = self._prepareSQL("SELECT")
curs = self.cursor()
curs.execute(sql, self._getID())
result = curs.fetchone()
if not resul... | python | def _loadDB(self):
"""Connect to the database to load myself"""
if not self._validID():
raise NotFound, self._getID()
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curs = self.cursor()
curs.execute(sql, self._getID())
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251,316 | stain/forgetSQL | lib/forgetSQL.py | Forgetter._saveDB | def _saveDB(self):
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251,317 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.getAll | def getAll(cls, where=None, orderBy=None):
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251,318 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.getAllIterator | def getAllIterator(cls, where=None, buffer=100,
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Possibly limitted by the where list of clauses that will be
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251,319 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.getAllIDs | def getAllIDs(cls, where=None, orderBy=None):
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Where should be some list of where clauses that will be joined
with AND). Note that the result might be tuples if this table
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251,320 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.getAllText | def getAllText(cls, where=None, SEPERATOR=' ', orderBy=None):
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... | python | def getAllText(cls, where=None, SEPERATOR=' ', orderBy=None):
"""Retrieve a list of of all possible instances of this class.
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251,321 | stain/forgetSQL | lib/forgetSQL.py | Forgetter.getChildren | def getChildren(self, forgetter, field=None, where=None, orderBy=None):
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251,322 | OpenVolunteeringPlatform/django-ovp-projects | ovp_projects/decorators.py | hide_address | def hide_address(func):
""" Used to decorate Serializer.to_representation method.
It hides the address field if the Project has 'hidden_address' == True
and the request user is neither owner or member of the organization """
@wraps(func)
def _impl(self, instance):
# We pop address field to avoid A... | python | def hide_address(func):
""" Used to decorate Serializer.to_representation method.
It hides the address field if the Project has 'hidden_address' == True
and the request user is neither owner or member of the organization """
@wraps(func)
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251,323 | OpenVolunteeringPlatform/django-ovp-projects | ovp_projects/decorators.py | add_current_user_is_applied_representation | def add_current_user_is_applied_representation(func):
""" Used to decorate Serializer.to_representation method.
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"""
@wraps(func)
def _impl(self, instance):
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251,324 | klorenz/python-argdeco | argdeco/main.py | Main.configure | def configure(self, debug=None, quiet=None, verbosity=None, compile=None, compiler_factory=None, **kwargs):
"""configure managed args
"""
if debug is not None:
self.arg_debug = debug
if quiet is not None:
self.arg_quiet = quiet
if verbosity is not None:
... | python | def configure(self, debug=None, quiet=None, verbosity=None, compile=None, compiler_factory=None, **kwargs):
"""configure managed args
"""
if debug is not None:
self.arg_debug = debug
if quiet is not None:
self.arg_quiet = quiet
if verbosity is not None:
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251,325 | klorenz/python-argdeco | argdeco/main.py | Main.uninstall_bash_completion | def uninstall_bash_completion(self, script_name=None, dest="~/.bashrc"):
'''remove line to activate bash_completion for given script_name from given dest
You can use this for letting the user uninstall bash_completion::
from argdeco import command, main
@command("uninstall-bas... | python | def uninstall_bash_completion(self, script_name=None, dest="~/.bashrc"):
'''remove line to activate bash_completion for given script_name from given dest
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251,326 | klorenz/python-argdeco | argdeco/main.py | Main.install_bash_completion | def install_bash_completion(self, script_name=None, dest="~/.bashrc"):
'''add line to activate bash_completion for given script_name into dest
You can use this for letting the user install bash_completion::
from argdeco import command, main
@command("install-bash-completion",
... | python | def install_bash_completion(self, script_name=None, dest="~/.bashrc"):
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251,327 | refinery29/chassis | chassis/util/params.py | _fetch_arguments | def _fetch_arguments(handler, method):
"""Get the arguments depending on the type of HTTP method."""
if method.__name__ == 'get':
arguments = {}
for key, value in six.iteritems(handler.request.arguments):
# Tornado supports comma-separated lists of values in
# parameters... | python | def _fetch_arguments(handler, method):
"""Get the arguments depending on the type of HTTP method."""
if method.__name__ == 'get':
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251,328 | refinery29/chassis | chassis/util/params.py | _apply_validator_chain | def _apply_validator_chain(chain, value, handler):
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chain = [chain, ]
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251,329 | refinery29/chassis | chassis/util/params.py | _parse_arguments | def _parse_arguments(self, method, parameters):
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errors = []
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251,330 | refinery29/chassis | chassis/util/params.py | parse | def parse(parameters):
"""Decorator to parse parameters according to a set of criteria.
This outer method is called to set up the decorator.
Arguments:
parameters: An array of parameter declarations tuples in the format:
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... | python | def parse(parameters):
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251,331 | refinery29/chassis | chassis/util/params.py | parse_dict | def parse_dict(parameters):
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parameters: An array of parameter declarations tuples in the format:
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251,332 | fstab50/metal | metal/logd.py | mode_assignment | def mode_assignment(arg):
"""
Translates arg to enforce proper assignment
"""
arg = arg.upper()
stream_args = ('STREAM', 'CONSOLE', 'STDOUT')
try:
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return None | python | def mode_assignment(arg):
"""
Translates arg to enforce proper assignment
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251,333 | boronine/discipline | discipline/models.py | Editor.save_object | def save_object(self, obj):
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251,334 | boronine/discipline | discipline/models.py | Editor.delete_object | def delete_object(self, obj, post_delete=False):
"""Delete an object with Discipline
Only argument is a Django object. Analogous to Editor.save_object.
"""
# Collect related objects that will be deleted by cascading
links = [rel.get_accessor_name() for rel in \
... | python | def delete_object(self, obj, post_delete=False):
"""Delete an object with Discipline
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251,335 | boronine/discipline | discipline/models.py | Action._description | def _description(self):
"""A concise html explanation of this Action."""
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return "Deleted %s" % inst.content_type.name
elif self.action_type == "cr":
return "Created %s" % inst._object_type_html()
... | python | def _description(self):
"""A concise html explanation of this Action."""
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251,336 | boronine/discipline | discipline/models.py | Action.__get_timemachine | def __get_timemachine(self):
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self.__timemachine = TimeMachine(
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251,337 | boronine/discipline | discipline/models.py | Action.__get_is_revertible | def __get_is_revertible(self):
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return False
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251,338 | boronine/discipline | discipline/models.py | Action.undo | def undo(self, editor):
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more accurately, reverts the object of this Action to the state
at which it was right before the Action took place."""
inst = self.timemachine
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raise Disci... | python | def undo(self, editor):
"""Create a new Action that undos the effects of this one, or,
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251,339 | boronine/discipline | discipline/models.py | Action._status | def _status(self):
"""Return html saying whether this Action is reverted by another
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text = ""
# Turns out that is related field in null, Django
# doesn't even make it a property of the object
# http://code.djangoproject.com/ticket/11920
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"""Return html saying whether this Action is reverted by another
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251,340 | boronine/discipline | discipline/models.py | Action.__summary | def __summary(self):
"""A plaintext summary of the Action, useful for debugging."""
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text += "Comitter: %s\n" % self.editor
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251,341 | boronine/discipline | discipline/models.py | Action._details | def _details(self, nohtml=False):
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# If deleted or created, show every field, otherwise only
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if self.action_type in ("dl","cr",):
fields = inst.fields + inst.f... | python | def _details(self, nohtml=False):
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251,342 | boronine/discipline | discipline/models.py | TimeMachine.__update_information | def __update_information(self):
"""Gether information that doesn't change at different points in
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info = {}
info["actions_count"] = Action.objects.count()
info["creation_times"] = []
info["deletion_times"] = []
info["content_type"] = None
... | python | def __update_information(self):
"""Gether information that doesn't change at different points in
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251,343 | boronine/discipline | discipline/models.py | TimeMachine.at | def at(self, step):
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Returns the TimeMachine at the time of that Action. (Less ambiguously:
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251,344 | boronine/discipline | discipline/models.py | TimeMachine.get | def get(self, key):
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251,345 | boronine/discipline | discipline/models.py | TimeMachine.get_timemachine_instance | def get_timemachine_instance(self, key):
"""Return a TimeMachine for a related object.
Take a string argument representing a ForeignKey field name, find what
object was related to this one at the time of this TimeMachine and
return a TimeMachine for that related object.
"""
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251,346 | boronine/discipline | discipline/models.py | TimeMachine.get_object | def get_object(self):
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251,347 | boronine/discipline | discipline/models.py | TimeMachine.restore | def restore(self, nosave=False):
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251,348 | boronine/discipline | discipline/models.py | TimeMachine.url | def url(self):
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251,349 | boronine/discipline | discipline/models.py | TimeMachine._object_type_html | def _object_type_html(self):
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251,350 | boronine/discipline | discipline/models.py | SchemaState.get_for_content_type | def get_for_content_type(self, ct):
"""Return the schema for the model of the given ContentType object"""
try:
return json.loads(self.state)[ct.app_label][ct.model]
except KeyError:
return None | python | def get_for_content_type(self, ct):
"""Return the schema for the model of the given ContentType object"""
try:
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except KeyError:
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251,351 | boronine/discipline | discipline/models.py | SchemaState.html_state | def html_state(self):
"""Display state in HTML format for the admin form."""
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ret = ""
state = json.loads(self.state)
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for (model, modelstate) in appstate.items():
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251,352 | ryanjdillon/pyotelem | pyotelem/plots/plotdynamics.py | plot_prh_des_asc | def plot_prh_des_asc(p, r, h, asc, des):
'''Plot pitch, roll, and heading during the descent and ascent dive phases
Args
----
p: ndarray
Derived pitch data
r: ndarray
Derived roll data
h: ndarray
Derived heading data
des: ndarray
boolean mask for slicing desc... | python | def plot_prh_des_asc(p, r, h, asc, des):
'''Plot pitch, roll, and heading during the descent and ascent dive phases
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p: ndarray
Derived pitch data
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Derived roll data
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Derived heading data
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251,353 | ryanjdillon/pyotelem | pyotelem/plots/plotdynamics.py | plot_prh_filtered | def plot_prh_filtered(p, r, h, p_lf, r_lf, h_lf):
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Args
----
p: ndarray
Derived pitch data
r: ndarray
Derived roll data
h: ndarray
Derived heading data
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r_lf: ndarray... | python | def plot_prh_filtered(p, r, h, p_lf, r_lf, h_lf):
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Derived pitch data
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251,354 | ryanjdillon/pyotelem | pyotelem/plots/plotdynamics.py | plot_swim_speed | def plot_swim_speed(exp_ind, swim_speed):
'''Plot the swim speed during experimental indices
Args
----
exp_ind: ndarray
Indices of tag data where experiment is active
swim_speed: ndarray
Swim speed data at sensor sampling rate
'''
import numpy
fig, ax = plt.subplots()
... | python | def plot_swim_speed(exp_ind, swim_speed):
'''Plot the swim speed during experimental indices
Args
----
exp_ind: ndarray
Indices of tag data where experiment is active
swim_speed: ndarray
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251,355 | spookey/photon | photon/settings.py | Settings.load | def load(self, skey, sdesc,
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Type of data to load. Is be used to reference the data \
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251,356 | jmgilman/Neolib | neolib/pyamf/sol.py | encode | def encode(name, values, strict=True, encoding=pyamf.AMF0):
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"""
Produces a SharedObject encoded stream based on the name and values.
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251,357 | jamieleshaw/lurklib | lurklib/__init__.py | Client.mainloop | def mainloop(self):
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251,358 | treycucco/bidon | bidon/spreadsheet/excel.py | ExcelWorksheet.parse_cell | def parse_cell(self, cell, coords, cell_mode=CellMode.cooked):
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# pylint: disable=too-many-return-statements
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r... | python | def parse_cell(self, cell, coords, cell_mode=CellMode.cooked):
"""Parses a cell according to the cell.ctype."""
# pylint: disable=too-many-return-statements
if cell_mode == CellMode.cooked:
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251,359 | treycucco/bidon | bidon/spreadsheet/excel.py | ExcelWorksheet.get_note | def get_note(self, coords):
"""Get the note for the cell at the given coordinates.
coords is a tuple of (col, row)
"""
col, row = coords
note = self.raw_sheet.cell_note_map.get((row, col))
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"""Get the note for the cell at the given coordinates.
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col, row = coords
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251,360 | treycucco/bidon | bidon/spreadsheet/excel.py | ExcelWorksheet._parse_date | def _parse_date(self, cell_value):
"""Attempts to parse a cell_value as a date."""
date_tuple = xlrd.xldate_as_tuple(cell_value, self.raw_sheet.book.datemode)
return self.tuple_to_datetime(date_tuple) | python | def _parse_date(self, cell_value):
"""Attempts to parse a cell_value as a date."""
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251,361 | itsnauman/termrule | tr/termrule.py | TermRule._parse_args | def _parse_args(cls):
"""
Method to parse command line arguments
"""
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cls.parser.add_argument(
"symbol", help="Symbol for horizontal line", nargs="*")
cls.parser.add_argument(
"--color", "-c", help="Color of th... | python | def _parse_args(cls):
"""
Method to parse command line arguments
"""
cls.parser = argparse.ArgumentParser()
cls.parser.add_argument(
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251,362 | itsnauman/termrule | tr/termrule.py | TermRule.run_args | def run_args(self):
"""
Pass in the parsed args to the script
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self.args = self.arg_parser.parse_args()
color_name = self.args.color
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color_name = color_name[0]
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"""
Pass in the parsed args to the script
"""
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251,363 | itsnauman/termrule | tr/termrule.py | TermRule._term_size | def _term_size(self):
"""
Method returns lines and columns according to terminal size
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Method returns lines and columns according to terminal size
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251,364 | itsnauman/termrule | tr/termrule.py | TermRule.tr | def tr(self, args, color=None):
"""
Method to print ASCII patterns to terminal
"""
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"""
Method to print ASCII patterns to terminal
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251,365 | heikomuller/sco-client | scocli/__init__.py | SCOClient.cache_add | def cache_add(self, resource_url, cache_id):
"""Add entry permanently to local cache.
Parameters
----------
resource_url : string
Resource Url
cache_id : string
Unique cache identifier for resource
"""
# Add entry to cache index
se... | python | def cache_add(self, resource_url, cache_id):
"""Add entry permanently to local cache.
Parameters
----------
resource_url : string
Resource Url
cache_id : string
Unique cache identifier for resource
"""
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251,366 | heikomuller/sco-client | scocli/__init__.py | SCOClient.cache_clear | def cache_clear(self):
"""Clear local cache by deleting all cached resources and their
downloaded files.
"""
# Delete content of local cache directory
for f in os.listdir(self.directory):
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"""Clear local cache by deleting all cached resources and their
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"""
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251,367 | heikomuller/sco-client | scocli/__init__.py | SCOClient.get_api_references | def get_api_references(self, api_url=None):
"""Get set of HATEOAS reference for the given SCO-API. Use the default
SCO-API if none is given. References are cached as they are not expected
to change.
Parameters
----------
Returns
-------
"""
# Get... | python | def get_api_references(self, api_url=None):
"""Get set of HATEOAS reference for the given SCO-API. Use the default
SCO-API if none is given. References are cached as they are not expected
to change.
Parameters
----------
Returns
-------
"""
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251,368 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_create | def experiments_create(self, name, subject_id, image_group_id, api_url=None, properties=None):
"""Create a new experiment at the given SCO-API. Subject and image
group reference existing resources at the SCO-API.
Parameters
----------
name : string
User-defined name ... | python | def experiments_create(self, name, subject_id, image_group_id, api_url=None, properties=None):
"""Create a new experiment at the given SCO-API. Subject and image
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251,369 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_get | def experiments_get(self, resource_url):
"""Get handle for experiment resource at given Url.
Parameters
----------
resource_url : string
Url for experiment resource at SCO-API
Returns
-------
scoserv.ExperimentHandle
Handle for local copy... | python | def experiments_get(self, resource_url):
"""Get handle for experiment resource at given Url.
Parameters
----------
resource_url : string
Url for experiment resource at SCO-API
Returns
-------
scoserv.ExperimentHandle
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251,370 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_fmri_create | def experiments_fmri_create(self, experiment_url, data_file):
"""Upload given data file as fMRI for experiment with given Url.
Parameters
----------
experiment_url : string
Url for experiment resource
data_file: Abs. Path to file on disk
Functional data f... | python | def experiments_fmri_create(self, experiment_url, data_file):
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Parameters
----------
experiment_url : string
Url for experiment resource
data_file: Abs. Path to file on disk
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251,371 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_fmri_get | def experiments_fmri_get(self, resource_url):
"""Get handle for functional fMRI resource at given Url.
Parameters
----------
resource_url : string
Url for fMRI resource at SCO-API
Returns
-------
scoserv.FunctionalDataHandle
Handle for fu... | python | def experiments_fmri_get(self, resource_url):
"""Get handle for functional fMRI resource at given Url.
Parameters
----------
resource_url : string
Url for fMRI resource at SCO-API
Returns
-------
scoserv.FunctionalDataHandle
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251,372 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_predictions_create | def experiments_predictions_create(self, model_id, name, api_url, arguments={}, properties=None):
"""Create a new model run at the given SCO-API.
Parameters
----------
model_id : string
Unique model identifier
name : string
User-defined name for experimen... | python | def experiments_predictions_create(self, model_id, name, api_url, arguments={}, properties=None):
"""Create a new model run at the given SCO-API.
Parameters
----------
model_id : string
Unique model identifier
name : string
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251,373 | heikomuller/sco-client | scocli/__init__.py | SCOClient.experiments_predictions_get | def experiments_predictions_get(self, resource_url):
"""Get handle for model run resource at given Url.
Parameters
----------
resource_url : string
Url for model run resource at SCO-API
Returns
-------
scoserv.ModelRunHandle
Handle for lo... | python | def experiments_predictions_get(self, resource_url):
"""Get handle for model run resource at given Url.
Parameters
----------
resource_url : string
Url for model run resource at SCO-API
Returns
-------
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251,374 | heikomuller/sco-client | scocli/__init__.py | SCOClient.get_object | def get_object(self, resource_url):
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resource if this is the first access to the resource. Downloads the
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cache directory.
Raises ValueError if... | python | def get_object(self, resource_url):
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251,375 | heikomuller/sco-client | scocli/__init__.py | SCOClient.image_groups_get | def image_groups_get(self, resource_url):
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Parameters
----------
resource_url : string
Url for image group resource at SCO-API
Returns
-------
scoserv.ImageGroupHandle
Handle for local c... | python | def image_groups_get(self, resource_url):
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Parameters
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resource_url : string
Url for image group resource at SCO-API
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251,376 | heikomuller/sco-client | scocli/__init__.py | SCOClient.image_groups_list | def image_groups_list(self, api_url=None, offset=0, limit=-1, properties=None):
"""Get list of image group resources from a SCO-API.
Parameters
----------
api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
offset : int, opti... | python | def image_groups_list(self, api_url=None, offset=0, limit=-1, properties=None):
"""Get list of image group resources from a SCO-API.
Parameters
----------
api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
offset : int, opti... | [
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251,377 | heikomuller/sco-client | scocli/__init__.py | SCOClient.models_get | def models_get(self, resource_url):
"""Get handle for model resource at given Url.
Parameters
----------
resource_url : string
Url for subject resource at SCO-API
Returns
-------
models.ModelHandle
Handle for local copy of subject resourc... | python | def models_get(self, resource_url):
"""Get handle for model resource at given Url.
Parameters
----------
resource_url : string
Url for subject resource at SCO-API
Returns
-------
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251,378 | heikomuller/sco-client | scocli/__init__.py | SCOClient.models_list | def models_list(self, api_url=None, offset=0, limit=-1, properties=None):
"""Get list of model resources from a SCO-API.
Parameters
----------
api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
offset : int, optional
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"""Get list of model resources from a SCO-API.
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api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
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251,379 | heikomuller/sco-client | scocli/__init__.py | SCOClient.subjects_create | def subjects_create(self, filename, api_url=None, properties=None):
"""Create new anatomy subject at given SCO-API by uploading local file.
Expects an tar-archive containing a FreeSurfer anatomy.
Parameters
----------
filename : string
Path to tar-archive on local di... | python | def subjects_create(self, filename, api_url=None, properties=None):
"""Create new anatomy subject at given SCO-API by uploading local file.
Expects an tar-archive containing a FreeSurfer anatomy.
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----------
filename : string
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251,380 | heikomuller/sco-client | scocli/__init__.py | SCOClient.subjects_get | def subjects_get(self, resource_url):
"""Get handle for subject resource at given Url.
Parameters
----------
resource_url : string
Url for subject resource at SCO-API
Returns
-------
scoserv.SubjectHandle
Handle for local copy of subject ... | python | def subjects_get(self, resource_url):
"""Get handle for subject resource at given Url.
Parameters
----------
resource_url : string
Url for subject resource at SCO-API
Returns
-------
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251,381 | heikomuller/sco-client | scocli/__init__.py | SCOClient.subjects_list | def subjects_list(self, api_url=None, offset=0, limit=-1, properties=None):
"""Get list of subject resources from a SCO-API.
Parameters
----------
api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
offset : int, optional
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"""Get list of subject resources from a SCO-API.
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api_url : string, optional
Base Url of the SCO-API. Uses default API if argument not present.
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251,382 | mattbierner/blotre-py | blotre.py | create_disposable | def create_disposable(clientInfo, config = {}):
"""
Create a new disposable client.
"""
response = requests.put(
_format_url(
_extend(DEFAULT_CONFIG, config),
OAUTH2_ROOT + 'disposable'),
json = clientInfo)
if response.status_code != 200:
return ... | python | def create_disposable(clientInfo, config = {}):
"""
Create a new disposable client.
"""
response = requests.put(
_format_url(
_extend(DEFAULT_CONFIG, config),
OAUTH2_ROOT + 'disposable'),
json = clientInfo)
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251,383 | mattbierner/blotre-py | blotre.py | _get_existing_disposable_app | def _get_existing_disposable_app(file, clientInfo, conf):
"""
Attempt to load an existing
"""
if not os.path.isfile(file):
return None
else:
data = None
with open(file, 'r') as f:
data = json.load(f)
if not 'client' in data or not 'creds' in data:
... | python | def _get_existing_disposable_app(file, clientInfo, conf):
"""
Attempt to load an existing
"""
if not os.path.isfile(file):
return None
else:
data = None
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251,384 | mattbierner/blotre-py | blotre.py | _try_redeem_disposable_app | def _try_redeem_disposable_app(file, client):
"""
Attempt to redeem a one time code registred on the client.
"""
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251,385 | mattbierner/blotre-py | blotre.py | _check_app_is_valid | def _check_app_is_valid(client):
"""
Check to see if the app has valid creds.
"""
try:
if 'refresh_token' in client.creds:
client.exchange_refresh_token()
else:
existing.get_token_info()
return True
except TokenEndpointError as e:
return False | python | def _check_app_is_valid(client):
"""
Check to see if the app has valid creds.
"""
try:
if 'refresh_token' in client.creds:
client.exchange_refresh_token()
else:
existing.get_token_info()
return True
except TokenEndpointError as e:
return False | [
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251,386 | mattbierner/blotre-py | blotre.py | create_disposable_app | def create_disposable_app(clientInfo, config={}):
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251,387 | mattbierner/blotre-py | blotre.py | Blotre.set_creds | def set_creds(self, newCreds):
"""Manually update the current creds."""
self.creds = newCreds
self.on_creds_changed(newCreds)
return self | python | def set_creds(self, newCreds):
"""Manually update the current creds."""
self.creds = newCreds
self.on_creds_changed(newCreds)
return self | [
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251,388 | mattbierner/blotre-py | blotre.py | Blotre.normalize_uri | def normalize_uri(self, uri):
"""Convert a stream path into it's normalized form."""
return urllib.quote(
re.sub(r"\s", '+', uri.strip().lower()),
safe = '~@#$&()*!+=:),.?/\'') | python | def normalize_uri(self, uri):
"""Convert a stream path into it's normalized form."""
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251,389 | mattbierner/blotre-py | blotre.py | Blotre.get_authorization_url | def get_authorization_url(self):
"""Get the authorization Url for the current client."""
return self._format_url(
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'response_type': 'code',
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"""Get the authorization Url for the current client."""
return self._format_url(
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'response_type': 'code',
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251,390 | mattbierner/blotre-py | blotre.py | Blotre._access_token_endpoint | def _access_token_endpoint(self, grantType, extraParams={}):
"""
Base exchange of data for an access_token.
"""
response = requests.post(
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"""
Base exchange of data for an access_token.
"""
response = requests.post(
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251,391 | mattbierner/blotre-py | blotre.py | Blotre.get_token_info | def get_token_info(self):
"""
Get information about the current access token.
"""
response = requests.get(
self._format_url(OAUTH2_ROOT + 'token_info', {
'token': self.creds['access_token']
}))
data = response.json()
if response.sta... | python | def get_token_info(self):
"""
Get information about the current access token.
"""
response = requests.get(
self._format_url(OAUTH2_ROOT + 'token_info', {
'token': self.creds['access_token']
}))
data = response.json()
if response.sta... | [
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251,392 | mattbierner/blotre-py | blotre.py | Blotre._add_auth_headers | def _add_auth_headers(self, base):
"""Attach the acces_token to a request."""
if 'access_token' in self.creds:
return _extend(base, {
'authorization': 'Bearer ' + self.creds['access_token']
})
return base | python | def _add_auth_headers(self, base):
"""Attach the acces_token to a request."""
if 'access_token' in self.creds:
return _extend(base, {
'authorization': 'Bearer ' + self.creds['access_token']
})
return base | [
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251,393 | mattbierner/blotre-py | blotre.py | Blotre._is_expired_response | def _is_expired_response(self, response):
"""
Check if the response failed because of an expired access token.
"""
if response.status_code != 401:
return False
challenge = response.headers.get('www-authenticate', '')
return 'error="invalid_token"' in challenge | python | def _is_expired_response(self, response):
"""
Check if the response failed because of an expired access token.
"""
if response.status_code != 401:
return False
challenge = response.headers.get('www-authenticate', '')
return 'error="invalid_token"' in challenge | [
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251,394 | mattbierner/blotre-py | blotre.py | Blotre._make_request | def _make_request(self, type, path, args, noRetry=False):
"""
Make a request to Blot're.
Attempts to reply the request if it fails due to an expired
access token.
"""
response = getattr(requests, type)(path, headers = self._add_auth_headers(_JSON_HEADERS), **args... | python | def _make_request(self, type, path, args, noRetry=False):
"""
Make a request to Blot're.
Attempts to reply the request if it fails due to an expired
access token.
"""
response = getattr(requests, type)(path, headers = self._add_auth_headers(_JSON_HEADERS), **args... | [
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Attempts to reply the request if it fails due to an expired
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251,395 | mattbierner/blotre-py | blotre.py | Blotre.put | def put(self, path, body):
"""PUT request."""
return self._make_request('put',
self._format_url(API_ROOT + path), {
'json': body
}) | python | def put(self, path, body):
"""PUT request."""
return self._make_request('put',
self._format_url(API_ROOT + path), {
'json': body
}) | [
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] | c98228d1159bc651aad546e442b0acbf97b1e043 | https://github.com/mattbierner/blotre-py/blob/c98228d1159bc651aad546e442b0acbf97b1e043/blotre.py#L248-L253 |
251,396 | mattbierner/blotre-py | blotre.py | Blotre.get_child | def get_child(self, streamId, childId, options={}):
"""Get the child of a stream."""
return self.get('stream/' + streamId + '/children/' + childId, options) | python | def get_child(self, streamId, childId, options={}):
"""Get the child of a stream."""
return self.get('stream/' + streamId + '/children/' + childId, options) | [
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251,397 | mattbierner/blotre-py | blotre.py | _BlotreDisposableApp._persist | def _persist(self):
"""Persist client data."""
with open(self.file, 'w') as f:
json.dump({
'client': self.client,
'creds': self.creds,
'config': self.config
}, f) | python | def _persist(self):
"""Persist client data."""
with open(self.file, 'w') as f:
json.dump({
'client': self.client,
'creds': self.creds,
'config': self.config
}, f) | [
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251,398 | etscrivner/nose-perfdump | perfdump/plugin.py | PerfDumpPlugin.options | def options(self, parser, env=os.environ):
"""Handle parsing additional command-line options"""
super(PerfDumpPlugin, self).options(parser, env=env)
parser.add_option("", "--perfdump-html", dest="perfdump_html_file",
help="Set destination for HTML report output") | python | def options(self, parser, env=os.environ):
"""Handle parsing additional command-line options"""
super(PerfDumpPlugin, self).options(parser, env=env)
parser.add_option("", "--perfdump-html", dest="perfdump_html_file",
help="Set destination for HTML report output") | [
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251,399 | etscrivner/nose-perfdump | perfdump/plugin.py | PerfDumpPlugin.configure | def configure(self, options, conf):
"""Configure this plugin using the given options"""
super(PerfDumpPlugin, self).configure(options, conf)
if not self.enabled:
return
try:
self.html_output_file = options.perfdump_html_file
except:
pass
... | python | def configure(self, options, conf):
"""Configure this plugin using the given options"""
super(PerfDumpPlugin, self).configure(options, conf)
if not self.enabled:
return
try:
self.html_output_file = options.perfdump_html_file
except:
pass
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