content
stringlengths
35
762k
sha1
stringlengths
40
40
id
int64
0
3.66M
from solith.li_nofk.int_nofk import calc_jp1d, calc_nk1d def convolve_nk(myk, nkm, gfunc, klim, nk, kmin=0.02, kmax=1.5): """Convolve n(k) by going to J(p); apply resolution; and back. Args: myk (np.array): k nkm (np.array): n(k) gfunc (callable): resolution function klim (float): maxmimum kvalue...
7b7c782b35e1a58c104d4e5fef38f867f85ba014
17,900
def label_connected_components(label_images, start_label=1, is_3d=False): """Label connected components in a label image. Create new label images where labels are changed so that each \ connected componnent has a diffetent label. \ To find the connected components, it is used a 8-neighborhood. Par...
670a90421237718e263de23987c4d646e0669ae1
17,901
def passed_hardfailure_detector(elb_data): """ Checks for hard failures """ if debug: logger.debug("Checking hard failure detector") # 1. Verify the Classic Load Balancer does not have HTTP, HTTPS or SSL # listeners for listener in elb_data['LoadBalancerDescriptions'][0]['ListenerDe...
2b35bd5b8adb6516b8cb2dbfc0fb7d9f2d72fa51
17,902
import os def load(name, data_dir='data'): """ Opens a saved `.npz` file containing 'dm' and 'z' arrays. Parameters ---------- name : str The name of the file to load. data_dir : str, optional The directory containing the data. The whole path must be specified except ...
728fcb3c4f71edf54bdf99fcb0d682d96fa77f33
17,903
def metadataAbstractElementEmptyValuesTest1(): """ No empty values. >>> doctestMetadataAbstractElementFunction( ... testMetadataAbstractElementEmptyValue, ... metadataAbstractElementEmptyValuesTest1(), ... requiredAttributes=["required1"], ... optionalAttributes=["optional1"...
6504b570a49876dfdbb84be4b56bd87978aef22c
17,904
def broadcast_dynamic_shape(shape_x, shape_y): """Computes the shape of a broadcast given symbolic shapes. When shape_x and shape_y are Tensors representing shapes (i.e. the result of calling tf.shape on another Tensor) this computes a Tensor which is the shape of the result of a broadcasting op applied in ten...
3716b11f62712d4fedd4f1c997e2ad022178848b
17,905
def extract_args_for_httpie_main(context, method=None): """Transform a Context object to a list of arguments that can be passed to HTTPie main function. """ args = _extract_httpie_options(context) if method: args.append(method.upper()) args.append(context.url) args += _extract_http...
7e6b4f9ff3bc5bc9d44d3a7537063f4dc0965ab3
17,906
def apply_configuration(dist: "Distribution", filepath: _Path) -> "Distribution": """Apply the configuration from a ``setup.cfg`` file into an existing distribution object. """ _apply(dist, filepath) dist._finalize_requires() return dist
0c5f8c3a8d41faacaa1c8a5c13fafbb67e561f64
17,907
def bitbucketBaseIssue(): """ BitbucketIssueのベースとなるデータを生成して返します。 """ return { 'assignee': None, 'component': None, 'content': 'issue_summary', 'content_updated_on': '4000-01-01T00:00:00Z', 'created_on': '3000-01-01T00:00:00Z', 'edited_on': '4000-01-01T00:0...
b0a81a9442377967b0838ffe49468dd21631b1c0
17,908
import os def FindChromeCandidates(overlay_dir): """Return a tuple of chrome's unstable ebuild and stable ebuilds. Args: overlay_dir: The path to chrome's portage overlay dir. Returns: Tuple [unstable_ebuild, stable_ebuilds]. Raises: Exception: if no unstable ebuild exists for Chrome. """ s...
834f577b82972167815d7efc037743724f8552e5
17,909
def is_hour_staffed(coverage_events_for_hour, level_mappings): """ Logic for determining if a shift is correctly staffed. The required subcalendar id determines which logic to apply coverage_events_for_hour is a list of coverage events for the hour (a list of CoverageOffered JSON objects) """ retur...
7afda68593610a572f15ff791013db570b7c69a6
17,910
import json def sqliteAdminBlueprint( dbPath, bpName='sqliteAdmin', tables=[], title='标题', h1='页标题', baseLayout='flask_sqlite_admin/sqlite_base.html', extraRules=[], decorator=defaultDecorator): """ create routes for admin """ sqlite = Blueprint(bpName, __name__,template_folder='templates...
6dc7f38db36f38835f2ee5274a716bde14284480
17,911
def AccountsUrl(command): """Generates the Google Accounts URL. Args: command: The command to execute. Returns: A URL for the given command. """ return '%s/%s' % (GOOGLE_ACCOUNTS_BASE_URL, command)
7c686ef8648abf3123ba1448594c333c3210331c
17,912
def iter_input_annotation_output_df_df(inspection_index, input_df, annotation_df, output_df): """ Create an efficient iterator for the inspection input """ # pylint: disable=too-many-locals # Performance tips: # https://stackoverflow.com/questions/16476924/how-to-iterate-over-rows-in-a-dataframe...
4e275565bfa570f48b0eacbe07029a7724305f9a
17,913
def measure_curvatures(left_fit, right_fit, ym_per_pix=1., xm_per_pix=1., y_eval=0): """ Calculate left and right lane line curvature Args: left_fit: `numpy.ndarray` second order linear regression of left lane line right_fit: `numpy.ndarray` second order linear regression of right lane li...
f602563e36cbff3e2eca00a7532c37fdb127a6c1
17,914
def ensure_present(params, check_mode): """ Ensure that the specified Hipersockets adapter exists and has the specified properties set. Raises: ParameterError: An issue with the module parameters. Error: Other errors during processing. zhmcclient.Error: Any zhmcclient exception can ha...
9a574df51dd8755e0d973438ec16d7209995b26a
17,915
import requests import base64 def get_processed_image(username): """Gets the b64 strings of the processed images from the server and converts them to image files Args: username (tkinter.StringVar): user-specified username to identify each unique user Returns: JpegImageFile: t...
6ced5ce2b8cf48a8a4ca04799ae6b61956c59bb8
17,916
def make_cse_path(raw_ticker: str, raw_industry: str) -> str: """makes slug for ticker for the cse Parameters: raw_ticker - cse ticker from xlsx sheet raw_industry - verbatim industry from ticker, not slugified Returns: description - url for cse files for download """ if pd.isna(r...
4466cd2e5c7416266db080b7b273b41c7469c790
17,917
import os def readTMY(filepath=os.path.join("TMY", "Germany DEU Koln (INTL).csv")): """ Reads a typical meteorological year file and gets the GHI, DHI and DNI from it. """ # get data data = pd.read_csv( os.path.join(PATH, "weatherdata", filepath), skiprows=([0, 1]), sep=","...
8d6b98f12081438d28cc62df1ed4e54d678ad180
17,918
def interface(inp, xdata, ydata): """ splits the c function output to two variables, the RMSE and the derivative of RMSE with respect to the parameters""" p = _gauss.gaussjac(xdata,ydata,inp) return p[0],p[1:]
28707bd4781f2e19623068c01dca3cf82f8f79df
17,919
import torch def generateCoverText_BERT(mod, tok, startOfText, ranks, completeMessage): """ Function to get the cover text that is sent from Alice to Bob based on the ranks of the secret text """ inputs = tok.encode(startOfText, return_tensors="pt", add_special_tokens=False) for s in ranks: tab = inputs...
405eb656db91eb073be580c8d10f8beb435d1bde
17,920
def infer_from_did_elasticnet(did, debug=False): """Returns `inferred` tuple (interaction_coefficients, growth_rates) Will return info as well if debug=True""" df_geom, df_dlogydt, df_nzmask, n_species = prepare_data_for_inference(did) ####### BEGIN THE INFERENCE!!!!! ####### regs = [] interc...
149e04379d06d3ab0ae183ecd622eae40041dd79
17,921
def Fanstatic(app, publisher_signature=fanstatic.DEFAULT_SIGNATURE, injector=None, **config): """Fanstatic WSGI framework component. :param app: The WSGI app to wrap with Fanstatic. :param publisher_signature: Optional argument to define the signature of the...
8813441736ffb05dcac7ea87d691a10ef9e582d7
17,922
def predicate_id(namespace, predicate, cursor=None): """ Get a RDF predicate ID, creating it if necessary. """ data = {'namespace': namespace, 'predicate': predicate} cursor = relations_reader.predicate_id(data, cursor=cursor) if not cursor.rowcount: relations_writer.upsert_predicate(da...
95925711f1cf7cbf3c648a954a431e66cda31e30
17,923
import copy def _create_filter_list(user_list, request=None): """ [メソッド概要] フィルタのリストを作成する [引数] user_list :_getUserData(filters)により作成されるuser_list request :logger.logic_logでuserId sessionIDを表示するために使用する [戻り値] filter_list """ logger.logic_log('LOSI00001', 'user_list: %s'...
730cf9140c3c66903f4223938090e6667af4d741
17,924
import subprocess import sys import traceback def run_script(cli_string, die=True, verbose=True): """Run the cli_string UNIX CLI command and record output. Args: cli_string: String of command to run die: Exit with error if True Returns: (returncode, stdoutdata, stderrdata): ...
f6357a6a70da41fbc42309865fed098451b3c166
17,925
from typing import List from typing import Dict def get_events() -> List[Dict]: """Represents set of sales events""" return [{ "Txid": 1, "productname": "Product 2", "qty": 2, "sales": 489.5 }, { "Txid": 2, "productname": "Product 3 XL", "qty": 2, ...
22361fc66926a9adb5b10f4ad9ba04767a7d7a25
17,926
def jump_handler(s): """Handling single and double jumps""" jump = 1 if s.poG or s.ljump and not s.poG and s.fz > 0 else 0 if jump and s.ljump != s.lljump or not s.ljump: s.pitch = s.yaw = s.roll = 0 if min(0.18, s.dT + 0.05) < s.airtime and s.fz > 100: jump = not s.ljump return ...
44826e6b55ff4ceda5a78c7dc0943e5f13f5934e
17,927
def sec2hms(sec): """ Convert seconds to hours, minutes and seconds. """ hours = int(sec/3600) minutes = int((sec -3600*hours)/60) seconds = int(sec -3600*hours -60*minutes) return hours,minutes,seconds
efea3a641c5f13313adb571c201cc25d2895757e
17,928
import tokenizers def to_english_like_sentence(sentence: str, tokenizer = tokenizers.JiebaTokenizer()): """ :param sentence: :return: """ return ' '.join(tokenizer(sentence))
6f63377885c07b9dd723178f2fbe7e6245659e2a
17,929
from datetime import datetime def get_month_range(start_date): """ Get the start and end datetimes for the month :param start_date: period start_date :type start_date: datetime.datetime() :return: tuple start_datetime, end_datetime """ start_date = datetime(start_date.year, start_date.mon...
74816209024cbd382121575ba27a9dd8cf967c2b
17,930
import os def generate_rendition(in_path: str, out_dir: str, size: int) -> str: """ Given an image path and a size, save a rendition to disk :param str in_path: Path to the file :param str out_dir: Directory to store the file in :param int size: Rendition size: :returns: a file path """ ...
328d95ee6659152d0dc9e8aa8299d185bc5f9eaf
17,931
def convert_to_rotation_fdot( gwfrequency=None, rotationfrequency=None, rotationperiod=None, gwfdot=None, rotationpdot=None, **kwargs, ): """ Convert the GW frequency (assumed to be twice the rotation frequency) or the rotation period and GW rotation frequency derivative or rotation ...
8d2321111c7f5d13f1ee93c828b5e6d0691a4fb2
17,932
import json def send_block( cmd=None, section=None, item=None, identifier=None, zone=None, owner=None, ttl=None, rtype=None, data=None, flags=None, filter_=None, ): """Send block command to Libknot server control.""" ctl = connect_knot() resp = None try: ...
b6edac27b74d432c796d759dd373a24cf6710abd
17,933
def _poisson_covariance(dist, lambda0): """ Poisson covariance model on the sphere. Parameters ---------- dist: float Great circle distance. lambda0: float Lengthscale parameter. """ cov = (1 - lambda0**2) / (1 - 2*lambda0*np.cos(dist) + lambda0**2)**(3/2) return cov
e2ebb694258d94b56a81ff44ee703871b722a0ad
17,934
def snot(N=None, target=None): """Quantum object representing the SNOT (2-qubit Hadamard) gate. Returns ------- snot_gate : qobj Quantum object representation of SNOT gate. Examples -------- >>> snot() Quantum object: dims = [[2], [2]], \ shape = [2, 2], type = oper, isHerm = T...
6b0820eda38b3eba0da9bdc6ca1b2e01c1b7ddc0
17,935
from typing import Callable from typing import Dict from typing import Type from pydantic import BaseModel # noqa: E0611 from typing import Any def _do_wrapper( func: Callable, *, responses: Dict[str, Type[BaseModel]] = None, header: Type[BaseModel] = None, cookie: Type[BaseMo...
5fe2a2698d5aadcbd8f2731d06158d02aaa0df31
17,936
def make_divisible(v, divisor, min_val=None): """ This function is taken from the original tf repo. It ensures that all layers have a channel number that is divisible by 8 It can be seen here: https://github.com/tensorflow/models/blob/master/research/slim/nets/mobilenet/mobilenet.py """ if m...
e843378d276518ac26a7896523da247c41437297
17,937
def mock_query_object(LCClient): """ Creating a Query Response object and prefilling it with some information """ # Creating a Query Response Object start = '2016/1/1' end = '2016/1/2' obj = { 'TimeRange': TimeRange(parse_time(start), parse_time(end)), 'Time_start': parse_tim...
cce825c17e902334db05d16f923aaa3f195bf2a8
17,938
def edit(photo_id): """ Edit uploaded photo information. :param photo_id: target photo id :return: HTML template for edit form or Json data """ if request.method == 'GET': photo = Photo.get(current_user.id, photo_id) return render_template('upload.html', photo=photo, gmaps_key=c...
2664cf584e5a303aac6afa75828fc873ea7e09ed
17,939
def crop_only(net1, net2): """ the size(net1) <= size(net2) """ net1_shape = net1.get_shape().as_list() net2_shape = net2.get_shape().as_list() # print(net1_shape) # print(net2_shape) # if net2_shape[1] >= net1_shape[1] and net2_shape[2] >= net1_shape[2]: offsets = [0, (net2_shape[1]...
0cc2462244efabfd0a40eb6571adfca080906d86
17,940
def normalize(image): """ Normalize to 0-255, dtype: np.uint8 """ if np.min(image) < 0: image = image - np.min(image) if np.max(image) != 0: image = image / np.max(image) image = image * 255 image = np.uint8(image) return image
4de22a943d4db3c54b433c833cd721cb94c4c5d6
17,941
import tempfile def temp_file(contents, suffix=''): """Create a self-deleting temp file with the given content""" tmpdir = get_test_tmpdir() t = tempfile.NamedTemporaryFile(suffix=suffix, dir=tmpdir) t.write(contents) t.flush() return t
2d5c5fa07322f1d2acf6d576c43007a5f1ae6977
17,942
def string_to_charlist(string): """Return a list of characters with extra empty strings after wide chars""" if not set(string) - ASCIIONLY: return list(string) result = [] if PY3: for c in string: result.append(c) if east_asian_width(c) in WIDE_SYMBOLS: ...
dde3d72c05c1e86f3d5a795280b80934b598c0ae
17,943
def urlparams(url_, hash=None, **query): """Add a fragment and/or query paramaters to a URL. New query params will be appended to exising parameters, except duplicate names, which will be replaced. """ url = urlparse.urlparse(url_) fragment = hash if hash is not None else url.fragment # Us...
4eb1f66778540470bb710970a8db712aa3cde9a8
17,944
def get(word, cache=True): """ Load the word 'word' and return the DudenWord instance """ html_content = request_word(word, cache=cache) # pylint: disable=unexpected-keyword-arg if html_content is None: return None soup = bs4.BeautifulSoup(html_content, 'html.parser') return DudenW...
face281ce5eb2ab1b398b573afeaebbb78da47d6
17,945
def cubespace(start, stop=False, num=10, include_start=True): """ Return sequence of *num* floats between *start* and *stop*. Analogously to numpy's linspace, values in returned list are chosen so that their cubes (hence name) are spread evenly in equal distance. If the parameter *stop* is not give...
d011ce033895465e9cb2ed0eb86598163d035208
17,946
def to_ndarray(arr): """ Convert a list of lists to a multidimensional numpy array @param arr: @return: """ return np.array([np.array(x) for x in arr])
1bf5ac651921a631e46d8ecae50b81082f9aea6e
17,947
def spectre_avatar(avatar, size="sm", **kwargs): """ render avatar :param avatar: :param size: :param kwargs: :return: HTML """ avatar_kwargs = kwargs.copy() avatar_kwargs['avatar_url'] = avatar avatar_kwargs['size'] = size if "background" not in avatar_kwargs.keys(): ...
d573336c13f63cb647d40241d2c37f78fd4cc292
17,948
def get_modules_by_appid(app_id): """ 查询业务下的所有模块信息 注意:企业版使用get_modules_by_property代替 """ cc_data = bk.cc.get_modules_by_property(app_id=app_id) return cc_data
d57277ec09433da3c03c8ece67cc994f27dfcd21
17,949
import os def get_bed_from_nx_graph( graph, bed_file, interval_key="active", merge=True, return_key="region"): """get BED file from nx examples """ if isinstance(graph.graph["examples"], basestring): graph.graph["examples"] = graph.graph["examples"].split(",...
e39d24247259e63d7406a900d0005af95903df75
17,950
def do_json_counts(df, target_name): """ count of records where name=target_name in a dataframe with column 'name' """ return df.filter(df.name == target_name).count()
c4b0cb52f28372a7d53a92984b3212c66c1556ab
17,951
def is_a(file_name): """ Tests whether a given file_name corresponds to a ICEYE file. Returns a reader instance, if so. Parameters ---------- file_name : str|BinaryIO the file_name to check Returns ------- CSKReader|None `CSKReader` instance if Cosmo Skymed file, `None`...
744d2ff8f940e220f0e41b8739a535c1afe6476e
17,952
def fetch_optimizer(args, model): """ Create the optimizer and learning rate scheduler """ optimizer = optim.AdamW(model.parameters(), lr=args.lr, weight_decay=args.wdecay, eps=args.epsilon) scheduler = optim.lr_scheduler.OneCycleLR(optimizer=optimizer, max_lr=args.lr, total_steps=args.num_steps+100, ...
d5fab8b0b665267c8b90eb25fe9dab3a7ce428e7
17,953
def model_fn_builder(bert_config, num_labels, init_checkpoint, learning_rate, num_train_steps, num_warmup_steps, use_tpu, use_one_hot_embeddings, freeze_bert, finetune_module, num_train_examples): """Returns `model_fn` closure for TPUEstimator.""" ...
a2ec1fd2a41916170ec34b1b988ce0b5c4466fd6
17,954
def load_series_spectrum_df(series_dict_channels): """ Takes a series of dictionaries generated by pd.Series.apply(load_channels) and returns a dataframe with the frequencies expanded as columns. If the frequencies are not identically overlapping across rows, the resulting set of columns will the t...
d2b398f11b3dc6d67c60f62f4e49938ce7817177
17,955
from typing import Dict def get_mujoco_features_dict( builder_config: BuilderConfig, ds_config: DatasetConfig) -> Dict[str, tfds.features.FeatureConnector]: """Builds the features dict of a Mujoco dataset. Args: builder_config: builder config of the Mujoco dataset. ds_config: config of the Mujoco...
96f12353f880028b231d1ebe67678b0c39118f42
17,956
def weighted_cross_entropy(y_true, y_pred): """ Weighted cross entropy loss :param y_true: Ground truth :param y_pred: Prediction :return: Loss value between y_true and y_pred """ try: [seg, weight] = tf.unstack(y_true, 2, axis=3) seg = tf.expand_dims(seg, -1) weigh...
9e91f93396975109a8f05ac56d4cc3ddc4460eb9
17,957
import os import yaml def get_config(custom_path=None): """ Get config file and load it with yaml :returns: loaded config in yaml, as a dict object """ if custom_path: config_path = custom_path else: for d in CONFIG_DIRS: config_path = os.path.join(d, CONFIG_FILENA...
48a4ef30ac246a0961ca61a7ac3abb7a035b3c2a
17,958
def union(a, b): """Find union of two lists, sequences, etc. Returns a list that includes repetitions if they occur in the input lists. """ return list(a) + list(b)
bf154b6222122aa61cf590022475dcd38eed6df4
17,959
def update_intervals(M, s, B): """ After found the s value, compute the new list of intervals """ M_new = [] for a, b in M: r_lower = ceil(a * s - 3 * B + 1, n) r_upper = ceil(b * s - 2 * B, n) for r in range(r_lower, r_upper): lower_bound = max(a, ceil(2 * B +...
3056a5e957317155b6ad2da28f2d05831e77af43
17,960
def mixer_l16_224_in21k(pretrained=False, **kwargs): """ Mixer-L/16 224x224. ImageNet-21k pretrained weights. Paper: 'MLP-Mixer: An all-MLP Architecture for Vision' - https://arxiv.org/abs/2105.01601 """ model_args = dict(patch_size=16, num_blocks=24, embed_dim=1024, **kwargs) model = _create_mixer...
cead4a01ef964af2ee9a9509881c2e58dcba9b6f
17,961
def autofill(blf_dict: dict, user_dict: dict): """Accepts a dictonary of BLFs and a dictionary of users. Where there is partial information (empty extension numbers or empty names) in the BLF dictionary, this function will look in the user dictionary for matching info it can use to fill in. """ ...
a995e2843d9571573f622f95097e0bd13f44aef2
17,962
def isoslice(var, iso_values, grid=None, iso_array=None, axis="Z"): """Interpolate var to iso_values. This wraps `xgcm` `transform` function for slice interpolation, though `transform` has additional functionality. Inputs ------ var: DataArray Variable to operate on. iso_values: li...
2bd475623b5862f5325250bd6b27d771c55e7e99
17,963
def user_prompt(msg: str, sound: bool = False, timeout: int = -1): """Open user prompt.""" return f'B;UserPrompt("{msg}",{sound:d},{timeout});'.encode()
25e2941c212c487f9a319159a3eab66d3ff38050
17,964
def ComputeWk(X, labels, classes): """ X - (d x n) data matrix, where n is samples and d is dimentionality lables - n dimentional vector which are class labels """ Wk = 0 for i in range(classes): mask = (labels == i) Wk = Wk + np.sum(np.sum((X[:, mask] - np.mean(X[:, mas...
3d68a2e6635194827e39762df566d24cc86a5e30
17,965
def vad_split(audio, rate, frame_duration, aggressiveness=1): """Splits the audio into audio segments on non-speech frames. params: audio: A numpy ndarray, which has 1 dimension and values within -1.0 to 1.0 (inclusive) rate: An integer, which is the rate at which samples are take...
e75ae1bd4681936922cbf53076da5bb10c0306c5
17,966
def is_extant_string(string): """Check if the string exists in the database""" return HyperlinkModel.objects.filter(internal=string).exists()
e87b1dc88359301a5bdd7a22b2ac47e65fd3559f
17,967
def time_to_convergence(T,P0,final_beliefs=False,tolerance=0,max_iter=10000): """ This function calculates the number of periods that it takes for opinions to stop changing in the DeGroot Model. Optionally, one can also get the final belief profile. """ T = np.asarray(T) P0 = np.transpose(np.asa...
b2cd345cfe573b11689a67108d9205a558ac2485
17,968
def count_subset_sum_recur(arr, total, n): """Count subsets given sum by recusrion. Time complexity: O(2^n), where n is length of array. Space complexity: O(1). """ if total < 0: return 0 if total == 0: return 1 if n < 0: return 0 if total < arr[n]: ret...
981b83014e75122dea814ace5b34b18f9803c3ad
17,969
def monthcalendar(year, month): """Return a matrix representing a month's calendar. Each row represents a week; days outside this month are zero.""" day1, ndays = monthrange(year, month) rows = [] r7 = range(7) day = (_firstweekday - day1 + 6) % 7 - 5 # for leading 0's in first week whi...
e5d9f370c0c3937d102f24aa342d0a755b234ca4
17,970
def Contap_HCurve2dTool_Bezier(*args): """ :param C: :type C: Handle_Adaptor2d_HCurve2d & :rtype: Handle_Geom2d_BezierCurve """ return _Contap.Contap_HCurve2dTool_Bezier(*args)
02e4c876c304383003b8cabe55cb233a59b9fdd9
17,971
def api_view_issue(repo, issueid, username=None, namespace=None): """ Issue information ----------------- Retrieve information of a specific issue. :: GET /api/0/<repo>/issue/<issue id> GET /api/0/<namespace>/<repo>/issue/<issue id> :: GET /api/0/fork/<username>/<repo...
3094d788a08c5547092fecab85bec08676ef323b
17,972
import torch def mcc_class_loss( predictions: torch.tensor, targets: torch.tensor, data_weights: torch.tensor, mask: torch.tensor, ) -> torch.tensor: """ A classification loss using a soft version of the Matthews Correlation Coefficient. :param predictions: Model predictions with shape(ba...
501d21791d88d4aacfc799f1bb8b64bf49da5bc7
17,973
def inverse(fun, value): """Calculate argument of f given its value""" epsilon = 1e-09 start = middle = 1e-09 end = 1e9 while abs(end - start) > epsilon: middle = (start + end) / 2 if isclose(fun(middle) - value, 0.0): break elif fun(middle) - value > 0 and fun(st...
fe9eb8b4e90cb8c6216620b6518bbf92404fd3c6
17,974
import os def get_test_files(dirname): """ Gets a list of files in directory specified by name. """ if not os.path.isdir(dirname): return [] path = dirname + "/{}" return list(map(path.format, sorted(os.listdir(dirname))))
8c9f4e47837534a0a826881cfe037f0042df9010
17,975
from backend.caffe.path_loader import PathLoader def getCaffemodelFromSolverstate(solverstate): """ Parse the filename of the caffemodel file from the solverstate file. """ proto = PathLoader().importProto() try: state = proto.SolverState() with open(solverstate, 'rb') as f: ...
ffdc936eed5e0dfe4b5a7c5321ed60cf67166b81
17,976
import re def get_L_from_D(line): """ Assume line contains one or more <Dn> Return list of all n """ a = [] for m in re.finditer(r'<D([0-9]+)>',line): a.append(m.group(1)) return a
2cd5c710709c38ea7a2b1890e084116a7fd5ee43
17,977
def per_pixel_mean_stddev(dataset, image_size): """ Compute the mean of each pixel over the entire dataset. """ #NOTE: Replace "3" by the number of channels initial_state = tf.constant(0., dtype=tf.float32, shape=[image_size, image_size, 3]) dataset = dataset.map(lambda x: resize(x, image_si...
38f479d7f1b1d422f15a5e5a6363552edb07fe69
17,978
def get_indexes_from_list(lst, find, exact=True): """ Helper function that search for element in a list and returns a list of indexes for element match E.g. get_indexes_from_list([1,2,3,1,5,1], 1) returns [0,3,5] get_indexes_from_list(['apple','banana','orange','lemon'], 'orange') -> returns [2]...
416d94de975603a60bf41974b8564cd868e503c0
17,979
def simplify_polygon(polygon, tolerance=0.01): """Remove doubles coords from a polygon.""" assert isinstance(polygon, Polygon) or isinstance(polygon, MultiPolygon) # Get the coordinates coords = [] if isinstance(polygon, Polygon): coords = polygon.exterior.coords elif isinstance(polygon,...
73fe9d950e5aa908e99c8fe21e28837852f7f3c6
17,980
def looks_like_PEM(text): """ Guess whether text looks like a PEM encoding. """ i = text.find("-----BEGIN ") return i >= 0 and text.find("\n-----END ", i) > i
ff310d6ffcf6d4ebd63331fdae66774009ef2b39
17,981
from typing import Counter def find_duplicates(list_to_check): """ This finds duplicates in a list of values of any type and then returns the values that are duplicates. Given Counter only works with hashable types, ie it can't work with lists, create a tuple of the lists and then count if the list_to...
1d608a70e7fb9be2001c73b72d3c1b62047539b5
17,982
from typing import Any def none_to_default(field: Any, default: Any) -> Any: """Convert None values into default values. :param field: the original value that may be None. :param default: the new, default, value. :return: field; the new value if field is None, the old value otherwise. :rt...
894d71c2cc89b02dc14fd7ddcd3a949bdc336692
17,983
def fetch_pauli2018(data_dir=None, url=None, resume=True, verbose=1): """ Downloads files for Pauli et al., 2018 subcortical parcellation Parameters ---------- data_dir : str, optional Path to use as data directory. If not specified, will check for environmental variable 'NNT_DATA';...
3b81073509b8e7986f28bde38e9c19fe73e616b4
17,984
def lambda_to_ent(la): """ entanglement from a schmidt coeff lambda ent = - [la * log(la) + (1 - la) * log(1 - la)] where la (lambda) is the Schmidt coefficient """ return - np.nan_to_num((1-la)*np.log(1-la) + la*np.log(la))
7f3e128931100f23897d1a36fce6994e95f58bef
17,985
from typing import Dict from typing import Callable import logging def parse_states( value_field: str, selected_values: selected_values_type, selected_fields: selected_fields_type, *, field_cleaners: Dict[str, Callable[[pd.DataFrame, str], pd.DataFrame]] = None, ) -> parsed_data_type: """ ...
79060844d0c5c555881458b20a70a0589780e027
17,986
def is_diagonal_segment(vector_start, vector_end): """Diagonal as defined by a slope of 1 or -1""" return slope(vector_start, vector_end) in (1, -1)
fbd56b3cbecf907b0e0a5fdd533b99472d532387
17,987
def properties_table(segment_props, columns=None, exclude_columns=None): """ Construct a `~astropy.table.Table` of properties from a list of `SegmentProperties` objects. If ``columns`` or ``exclude_columns`` are not input, then the `~astropy.table.Table` will include all scalar-valued properties. ...
82f2b69a9c6289a62200e4e3cead83d9a1fb3fd9
17,988
def create_mutation(model, app): """Create Class-Mutation.""" app_name_lower = app.name.lower() type_name = f"{ app_name_lower }{ app.model.name }Type" mutation_name = f"{ app_name_lower }{ app.model.name }Mutation" form_name = f"{ app_name_lower }{ app.model.name }Form" api_uri = f"{ app_name_l...
6a4837e0369bc2e0f1967edabc97edf8eba9fac1
17,989
def read_players_info(): """Get players info - [player 1 name, player 1 sign]""" first_player_name = input("Player one name: ") second_player_name = input("Player two name: ") first_player_sign = read_first_player_sign(first_player_name) second_player_sign = "O" if first_player_sign == "X" else "X" ...
ceff930373ae4abd2c7605297ea9b0259282110a
17,990
def z_gate_circuits_deterministic(final_measure=True): """Z-gate test circuits with deterministic counts.""" circuits = [] qr = QuantumRegister(1) if final_measure: cr = ClassicalRegister(1) regs = (qr, cr) else: regs = (qr, ) # Z alone circuit = QuantumCircuit(*regs...
7137b04a351ecca99bf0c6e59058cd1ef49e2ba7
17,991
from sympy import Add import sympy def symbol_sum(variables): """ ``` python a = symbols('a0:100') %timeit Add(*a) # >>> 10000 loops, best of 3: 34.1 µs per loop b = symbols('b0:1000') %timeit Add(*b) # >>> 1000 loops, best of 3: 343 µs per loop c = symbols...
f923d504760858d3cc7c4dc77ce50fe9fd4036f6
17,992
from typing import Optional def any_specified_encoding(sequence: bytes, search_zone: int = 4096) -> Optional[str]: """ Extract using ASCII-only decoder any specified encoding in the first n-bytes. """ if not isinstance(sequence, bytes): raise TypeError seq_len = len(sequence) # type: int...
f8cfe1bcb2b4fc4f2b498b252c0f946ff4773c04
17,993
import warnings def maf(genotypes): """Computes the MAF and returns a boolean indicating if the minor allele is currently the coded allele. """ warnings.warn("deprecated: use 'Genotypes.maf'", DeprecationWarning) g = genotypes.genotypes maf = np.nansum(g) / (2 * np.sum(~np.isnan(g))) if m...
192d43b46cd8028245e4df45bdda5d3227495e18
17,994
def lower_bound_jensen_shannon(logu, joint_sample_mask=None, validate_args=False, name=None): """Lower bound on Jensen-Shannon (JS) divergence. This lower bound on JS divergence is proposed in [Goodfellow et al. (2014)][1] and [Nowozin et al. (2016)][2]. When estimating lower bou...
4cdf48b5a018e33cca4a7f4aeab55d649664c5c5
17,995
import numpy import scipy def competition_ranking(data, dtype="int32"): """ Ranks the given data in increasing order and resolving duplicates using the lowest common rank and skipping as many ranks as there are duplicates, i.e., [0.5, 1.2, 3.4, 1.2, 1.2] -> [1, 2, 5, 2, 2]. Parameters --...
d4e05b9f35a0706faa2f09840391ee45d12062ce
17,996
def fmt_dashes(name: str) -> str: """ Converts name to words separated by dashes. Words are identified by capitalization, dashes, and underscores. """ return '-'.join([word.lower() for word in split_words(name)])
b58bba1beee9870fcc46d0abeba5f33a54066afe
17,997
def stringify_dict_key(_dict): """ 保证_dict中所有key为str类型 :param _dict: :return: """ for key, value in _dict.copy().items(): if isinstance(value, dict): value = stringify_dict_key(value) if not isinstance(key, str): del _dict[key] _dict[str(key)] ...
e83df720772aa4122d9a435da20279d4a800e074
17,998
def bestIndividual(hof, X, y): """ Get the best individual """ maxAccurcy = 0.0 for individual in hof: if(individual.fitness.values > maxAccurcy): maxAccurcy = individual.fitness.values _individual = individual _individualHeader = [list(X)[i] for i in range( ...
7643001710ba644b2d5886d6a2e86b3ae1c79018
17,999