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def parse_arxiv_json(data): """ Parses the response from the arxiv_metadata collection in Solr for the exact search on arxiv_identifier. It returns the published date of the first version of the paper (i.e. if there are multiple versions, it ignores the revision dates)""" docs = data['response'][...
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def get_protocol(url, default="http"): """ Extracts the protocol, or returns value of default param (defaults to http) """ double_slash = url.find("//") if double_slash == -1: protocol = default else: protocol = url[:url.find('//')] if protocol.endswith(':'): protocol = protocol[:-1] if protocol == ...
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def _check_if_found(new_term: str, targets: list) -> bool: """ Checks if `new_term` matches `targets`. :param new_term: string to check :param targets: list of strings to match to `new_term`. Targets can be a list of specific targets, e.g. ['UBERON:123219', 'UBERON:1288990'] or of general ontol...
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def rotate(list, places): """Shift the elements in a list. A positive place will move the list to the left, a negative place to the right.""" return list[places:] + list[:places]
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def ip4_subnet_c(ip): """returns C subnet of ipv4 address e.g.: 1.2.3.4 -> 1.2.3.0""" return ".".join(ip.split(".")[:-1]) + ".0"
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def has_value(value): """ We want values like 0 and False to be considered values, but values like None or blank strings to not be considered values """ return value or value == 0 or value is False
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def repeat_list_elements(a_list, rep): """ Creates a list where each element is repeated rep times. """ return [element for _ in range(rep) for element in a_list]
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def count_meme_entries(motif_path): """Count number of meme entries""" with open(motif_path, "r") as f: counter = 0 for line in f: if line[:6] == "letter": counter += 1 return counter
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def get_domains(contents_list): """ Return list of domains without <br/> """ return [item for item in contents_list if str(item) != '<br/>']
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from pathlib import Path def broken_config(tmp_path): """ Writes a improperly formatted config.yml file into the directory broken_config. """ # Create directory for the config (to avoid messing up the config # in tmp_path used by other tests) dir = Path(tmp_path, "broken_config") dir....
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def _validate_prefix(prefix, avoid): """ Validate an install prefix. """ if prefix.startswith(avoid): rest = prefix[0:len(avoid)] return rest != "/" and rest != "" return True
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def cowsay(input_string): """Return ASCI art of a cow saying the input_string.""" output_string = " " for letter in list(input_string): output_string += "_" output_string += "__\n< {} >\n ".format(input_string) for letter in list(input_string): output_string += "-" output_strin...
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def _coerce_to_list(obj): """Return [obj] if obj is not a list, otherwise obj.""" if not isinstance(obj, list): return [obj] else: return obj
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def rgb2rgb01(r, g, b): """ Convert between RGB [0-255] and RGB [0-1] """ return tuple([ float(i)/255. for i in [r,g,b] ])
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def global_flip_lr(boxes3d): """Flip y axis (y coordinate of the center position and yaw angle)""" boxes3d['c'][:,1] *= -1 boxes3d['r'][:,2] *= -1 return boxes3d
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import shutil def tempfiles(tmpdir, filespath): """Fixture for copying test files into a temporary directory""" dest = tmpdir.join('testfiles') shutil.copytree(filespath, str(dest)) return str(dest)
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def strings_to_ints(lst): """transforms a list of strings to a list of ints ARGS: list of strings RETURNS: list of ints RAISES: ValueError: when the string in the list is not a number """ return [int(x.strip()) for x in lst]
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import hmac def calculate_message_signature(key: str, msg: str): """ calculate a message signature using a SHA1 HMAC :param key: the secret token :param msg: the message :return: the calculated HMAC """ return hmac.new(key.encode(), msg=msg.encode(), digestmod='sha1').hexdigest()
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from typing import List def count_occupied_seats(layout: List[List[str]]) -> int: """ Count quantity of occupied seats in a given layout :param layout: seat layout :return: quantity of occupied seats """ occupied_seats = sum(sum(1 for seat in r if seat == '#') for r in layout) return occ...
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def vb_scale(vb, p_a_r, doc_width, doc_height): """" Parse SVG viewbox and generate scaling parameters. Reference documentation: https://www.w3.org/TR/SVG11/coords.html Inputs: vb: Contents of SVG viewbox attribute p_a_r: Contents of SVG preserveAspectRatio attribute ...
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def swap(number, i1, i2): """ Swap given bits from number. :param number: A number :type number: int :param i1: Bit index :type i1: int :param i2: Bit index :type i2: int :return: A number with given bits swapped. :rtype: int >>> swap(0b101011, 1, 4) == 0b111001 True ...
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def get_support(cluster): """ Returns support >>> get_support({5: {'11111': ['ab', 'ac', 'df', 'bd', 'bc']}, ... 4: {'11101': ['ef', 'eg', 'de', 'fg'], '11011': ['cd']}, ... 3: {'11001': ['ad'], '10101': ['dg']}, ... 2: {'10010': ['dh', 'bh'], '11000': ['be...
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def is_end_word(word): """ Determines if a word is at the end of a sentence. """ if word == 'Mr.' or word == 'Mrs.': return False punctuation = "!?." return word[-1] in punctuation
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import math def lmoments_parameter_estimation_generalized_logistic(lambda1, lambda2, tau): """Return the location, scale and shape or the generalized logistic distribution Based on SUBROUTINE PELGLO of the LMOMENTS Fortran package version 3.04, July 2005 :param lambda1: L-moment-1 :param lambda2: L-...
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def is_same_scanner_position(*images): """Check that all images have the same unique scanner position. Parameters ---------- images : sequence[MRI] Returns ------- True if all elements of the input set have the same unique scanner position (which is not `None`). """ uids = [im...
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def sizeof(bsObj): """ Size of BotSense object in bytes. Size is contextual by object type. """ return bsObj.__sizeof__()
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from typing import Any import torch def is_singleton_tensor(x: Any) -> bool: """Is x a dimensionless tensor?""" return torch.is_tensor(x) and x.dim() == 0
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def convert_attr_name(s): """Convert all underline in string name to space and capitalize """ return " ".join(map(str.capitalize, s.strip().split("_")))
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def kilometers_to_miles(input_km_value): """Convert kilometers to miles. :param input_km_value: Kilometer value to convert to miles :type input_km_value: float, int :return: Miles """ return input_km_value * 0.621371
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def format_fuzzy_result(es_result): """ format the es search result to front end processable format @param es_result: the es search result @type es_result: dict @return: the front end processable format, while will be like this:: [{'compound_id': id, 'name': name},...] @rtype: list ...
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def get_element_tag(element): """Returns the tag name string without namespace of the passed element.""" return element.tag.rsplit('}')[1]
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def _convert_ITP_to_path_to_index(index_to_path): """convert index_to_path pandas series to path_to_index dict ---- index_to_path:(pandas.series) returns path_to_index:(dict) {path:[indices corresponding to that path]} """ path_to_index = dict() for i in index_to_path.index: index, path = i, index_to_path[i...
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import json def js_r(file_path: str) -> dict: """ Read a .json file into a dictionary Parameters ---------- file_path: str the path to the .json file Returns ------- the .json file in dictionary format """ with open(file_path) as f_in: return json.load(f_in)
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def _get_action_profile(x, indptr): """ Obtain a tuple of mixed actions from a flattened action profile. Parameters ---------- x : array_like(float, ndim=1) Array of flattened mixed action profile of length equal to n_0 + ... + n_N-1, where `out[indptr[i]:indptr[i+1]]` contains play...
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def _get_all_osc(centers, osc_low, osc_high): """Returns all the oscillations in a specified frequency band. Parameters ---------- centers : 1d array Vector of oscillation centers. osc_low : int Lower bound for frequency range. osc_high : int Upper bound for frequency ra...
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def coin_snapshot(self, fsym, tsym): """ https://www.cryptocompare.com/api/#-api-data-coinsnapshot- Keyword arguments: fsym - The symbol of the currency you want to get that for tsym - The symbol of the currency that data will be in. """ self._is_params_valid(fsym=fsym, tsym=tsym) ...
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def vumps_params(checkpoint_every=500, gauge_via_svd=True, gradient_tol=1E-3, max_iter=200): """ Bundles parameters for the vumps solver itself. PARAMETERS ---------- gradient_tol (float) : Convergence is declared once the gradient norm is at least th...
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def finite_diff_gradient_descent(f, begin, end, x0=None, niters=10, lr=1): """Find the local minima using gradient descent Parameters: f (function): Function to find the local minima begin (int): beginning of the interval end (int): end of interval x0 (int): initial point ...
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def _get_module_src_file(module): """ Return module.__file__, change extension to '.py' if __file__ is ending with '.pyc' """ return module.__file__[:-1] if module.__file__.endswith(".pyc") else module.__file__
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def find_index_list(inputlist, key): """get a list of index for key in inputlist""" start = 0 indexlist = [] while 1: try: index = inputlist.index(key, start) except: break indexlist.append(index) start = index + 1 return indexlist
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def parse_test_names(test_name_args): """Returns a dictionary mapping test case names to a list of test functions :param test_name_args: The parsed value of the ``--test`` or ``--skip`` arguments :return: None if ``test_name_args`` is None, otherwise return a dictionary mapping test case n...
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def _ValidateRepoToDepPathConfig(repo_to_dep_path): """Checks that the repo_to_dep_path is properly formatted. Args: repo_to_dep_path (dict): A dictionary mapping repository url to its chromium repo path. For example: { "https://boringssl.googlesource.com/boringssl.git": ...
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def _pad_with_nulls(data, len_): """ Pad string with null bytes. Parameters ---------- data : str/bytes the string/bytes to pad len_ : int the final desired length """ return data + (b'\x00' * (len_ - len(data)))
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def ensure_keys(dict_obj, *keys): """ Ensure ``dict_obj`` has the hierarchy ``{keys[0]: {keys[1]: {...}}}`` The innermost key will have ``{}`` has value if didn't exist already. """ if len(keys) == 0: return dict_obj else: first, rest = keys[0], keys[1:] if first not in ...
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import io def read_file(file): """Open and read file input.""" f = io.open(file, 'r', encoding='utf-8') text = f.read() f.close() return text
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def fst(pair): """ First of a pair.""" return pair[0]
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def calculate_test_values( total_words, ocr_recognized_words, tp, tn, fn ): """ Calculates the model test values : TP : True Positive (There are words and every word has been recognized) TN : True Negative (There is no word and no word has been recognized) FP : False Positive (There ...
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def get_message_ids(service): """ Returns all the message ids from the user 'INBOX'. """ msg_list = service.users().messages().list(userId='me', labelIds='INBOX').execute() message_ids = msg_list['messages'] return message_ids
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def get_square_color(box, x, y, side): """Gets the color of the square with its top left corner at (x, y) and with the sides being a length of side Returns None if they are not all the same color or if side == 1""" colors = set() for i in range(side-1): for j in range(side-1): color...
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def consume_byte(content, offset, byte, length=1): """Consume length bytes from content, starting at offset. If they are not all byte, raises a ValueError. """ for i in range(length-1): if content[offset + i:offset + i+1] != byte: raise ValueError(("Expected byte '0x%s' at offs...
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def merge_qs_maps(obj1, obj2): """ Merge queryset map in `obj2` on `obj1`. """ for model, [qs2, fields2] in obj2.items(): query_field = obj1.setdefault(model, [model.objects.none(), set()]) query_field[0] |= qs2 # or'ed querysets query_field[1].update(fields2) # add ...
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def generate_factor_list(factor_list, df): """ Create a dictionary that contains the unique values of different factors based on the input dataset for visualizations toggling. Args: factor_list(list): List containing factors the user want to toggle when interacting with ...
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def forward_box(box): """Increase box level (max 4) Parameters ---------- box: int question box level Returns ------- int: updated box """ if box < 4: box += 1 return box
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def _quadratic_bezier(y_points, t): """ Makes a single quadratic Bezier curve weighted by y-values. Parameters ---------- y_points : Container A container of the three y-values that define the y-values of the Bezier curve. t : numpy.ndarray, shape (N,) The array of value...
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def all_1_bits() -> int: """ Returns: Examples: >>> all_1_bits() -1 >>> bin(all_1_bits()) '-0b1' """ return ~0
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def ignore(name, *names): """ Function decorator used to ignore certain parameters of your function when it is converted to command. You can specify one or more parameters to ignore. Parameters ---------- name : str Name of the parameter. names : Specify more parameters ...
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def checkBaseClassesMatch(bases, typename): """Recursively check if the name of the types in bases (or parents) are equal to typename | *Args:* | bases - A tuple of types | typename : str - A name of a type | *Returns:* | True if any of the names of types in bases or any of...
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def get_equipped_in_slot(actor, slot): """ Returns Equipment in a slot, or None. """ if hasattr(actor, 'inventory'): for obj in actor.inventory: if obj.equipment and obj.equipment.slot == slot and obj.equipment.is_equipped: return obj.equipment return None
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def my_reverse(L): """ Accepts a list `L` and reverses its elements. Solves problems 1 & 2. Parameters ---------- L : list The list to be reversed. Returns ------- revL : list The reversed list. """ # Initialisations revL = list() # The empty list to be app...
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def GetExamples(node): """Returns the examples (if any) for some Unit node.""" return node.examples
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def get_Id_Iq(self): """Return Id and Iq Parameters ---------- self : OPdq An OPdq object Returns ------- I_dict : dict Dict with key "Id", "Iq" """ return {"Id": self.Id_ref, "Iq": self.Iq_ref}
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from typing import Tuple def split_str_date_dt_sc(str_date: str) -> Tuple: """Split string date to date and time. :param str_date: String date in the format YYYY-MM-DD :return: Tuple with date and time """ if ' ' not in str_date: dt = str_date sc = '00:00:00' else: dt,...
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def bubble_sort(array): """ Sort array in ascending order by bubble sort Bubble sort, sometimes referred to as sinking sort, is a simple sorting algorithm that repeatedly steps through the list, compares adjacent pairs and swaps them if they are in the wrong order. - Best-case time perform...
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def get_strip_square(image, idx): """gets the idxth square from a horizontal strip of images""" square_size = image.size[1] x_start = square_size * idx result = image.crop((x_start, 0, x_start + square_size, square_size)) result.load() return result
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def create_cmd(parts): """Join together a command line represented as list""" sane_parts = [] for part in parts: if not isinstance(part, str): # note: python subprocess module raises a TypeError instead # of converting everything to string part = str(part) ...
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def get_login_url(client_id: str, redirect_uri: str) -> str: """ Returns the url to the website on which the user logs in """ return f"https://login.live.com/oauth20_authorize.srf?client_id={client_id}&response_type=code&redirect_uri={redirect_uri}&scope=XboxLive.signin%20offline_access&state=<optional;...
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def eval_input(variable, table): """ Requests user input for given variable and assigns it to a copy of the table """ copy_table = table.copy() input_val = int(input("Enter value for " + variable + ": ")) copy_table[variable] = input_val return copy_table
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import torch def from_onehot(onehot, dim=-1, dtype=None): """Argmax over trailing dimension of tensor ``onehot``. Optional return dtype specification.""" indexes = torch.argmax(onehot, dim=dim) if dtype is not None: indexes = indexes.type(dtype) return indexes
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from typing import Any import io def is_file_like(value: Any) -> bool: """Check if a value represents a file like object""" return isinstance(value, io.IOBase)
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def to_secs(x: str) -> int: """Convert time from hh:mm:ss (str) format to seconds (int). """ h, m, s = x.split(':') return int(h) * 3600 + int(m) * 60 + int(s)
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def create_mae_rescaled(scale_factor): """Create a callback function which tracks mae rescaled Arguments: scale_factor: Scaling factor with which the labels were scaled initially """ def mae_rescaled(y_true, y_pred): difference = abs(y_pred - y_true) return difference / scale_fa...
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def filter_arglist(args, defaults, bound_argnames): """ Filters a list of function argument nodes (``ast.arg``) and corresponding defaults to exclude all arguments with the names present in ``bound_arguments``. Returns a pair of new arguments and defaults. """ new_args = [] new_defaults ...
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def only_sig(row): """Returns only significant events""" if row[-1] == 'yes': return row
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def rowmul(matlist, index, k, K): """ Multiplies index row with k """ for i in range(len(matlist[index])): matlist[index][i] = k * matlist[index][i] return matlist
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from typing import List from typing import Any def _partition(items: List[Any], left: int, right: int) -> int: """Partitions the array around the pivot value. Picks a pivot value and sorts everything to the left <= pivot, and everything greater than pivot to the right. At the end, the pivot will be ...
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def sorted_equality(v1, v2, read): """ Equality for fields where the values must be sorted before equality tested. """ return sorted(v1) == sorted(v2)
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def get_model(dataset, model_hparams): """Return the dataset class with the given name Args: dataset (str): name of the dataset model_hparams (dict): model hyperparameters """ if model_hparams['model'] not in globals(): raise NotImplementedError("Dataset not found: {}".form...
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import json import requests def metadata_post_request(file_name, metadata, auth_parameter, url): """ Used to structure and make the post request for metadata to Zenodo. Parameters ---------- file_name : str The name of the file to be created. metadata : dict The PresQT metadat...
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import re def uncamel(s): """Convert CamelCase to underscore_case.""" return re.sub('(?!^)([A-Z])(?=[^A-Z])', r'_\1', s).lower()
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import re def _GenerateSensitiveWordsRe(words): """Returns the regexp for matching sensitive words. Args: words: A sequence of strings. Returns: A pattern object, matching any of the given words. If words is empty, returns None. """ if not words: return None union = [] for word in word...
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def get_bill_to_address(user): """ Create an address appropriate to pass to billTo on the CyberSource API Args: user (User): the user whose address to use Returns: dict: User's legal_address in the appropriate data structure """ legal_address = user.legal_address ...
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def fold_whoopsies(whoopsies1, whoopsies2): """ Merge whoopsies2 into whoopsies1 sorted on query, then descending on magnitude of the whoops (so biggest whoops for queries come first)""" whoopsies1.extend(whoopsies2) whoopsies1.sort(key=lambda x: (x.qid, 1000-x.magnitude())) return whoop...
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def set_ipu_model_options(opts, compile_ipu_code=True): """Set the IPU Model options. Args: compile_ipu_code: Whether or not to actually compile real IPU code for modelling. Returns: The IpuOptions configuration protobuf, with IPU model options set. """ opts.ipu_model_config.compile_ipu_code =...
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def _ta_append(tensor_array, value): """Append a value to the end of a tf.TensorArray.""" return tensor_array.write(tensor_array.size(), value)
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def build_cmd(*args, **kwargs): """ >>> build_cmd('script.py', 'train', model_pickle='tmp.pkl', shuffle=True) 'script.py train --model_pickle "tmp.pkl" --shuffle' """ options = [] for key, value in kwargs.items(): if isinstance(value, bool): if value: options....
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def StripSo(name): """Strip trailing hexidecimal characters from the name of a shared object. It strips everything after the last '.' in the name, and checks that the new name ends with .so. e.g. libc.so.ad6acbfa => libc.so foo.bar.baz => foo.bar.baz """ stripped_name = '.'.join(name.split('.')[:-1])...
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def any_ga(geoawi): """ GEOAWI: GA W/I GRID 0=None 1=Quest 2=<I2 3=<O2 4=<1/2 DA 5=<1DA 6=<2DA 7=>2DA 8=CG Returns: 0, 1, 88 """ if geoawi == 0: return 0 elif 1 <= geoawi <= 7: return 1 elif geo...
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def transpose(table): """ Returns a copy of table with rows and columns swapped Example: 1 2 1 3 5 3 4 => 2 4 6 5 6 Parameter table: the table to transpose Precondition: table is a rectangular 2d List of numbers """ result = []...
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def shake_drop_eval(x, mask_prob, alpha_min, alpha_max): """ShakeDrop eval pass. See https://arxiv.org/abs/1802.02375 Args: x: input to apply ShakeDrop to mask_prob: mask probability alpha_min: alpha range lower alpha_max: alpha range upper Returns: """ expected_alpha = (alpha_max + alpha...
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def measure(obj, depth=0): """ Returns the number of nodes, properties and the depth of an inspect tree. `obj` is a dict read from JSON that represents inspect data """ nodes = 0 properties = 0 max_depth = depth for (_, child) in obj.items(): # ensure this is a node that is not a...
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def shrink_sides(image, ts=0, bs=0, ls=0, rs=0): """Shrinks/crops the image through shrinking each side of the image. params: image: A numpy ndarray, which has 2 or 3 dimensions ts: An integer, which is the amount to shrink the top side of the image bs: An integer, which is t...
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import re def opensearch_clean(f): """ Some opensearch clients send along optional parameters from the opensearch description when they're not needed. For example: state={openoni:state?} These can cause search results not to come back, and even can cause Solr's query parsing to thro...
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def GetLoans(sliver_name): """Return the list of loans made by the specified sliver""" rec = sliver_name return rec.get('_loans', [])[:]
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def humanize_seconds(seconds): """ Returns a humanized string representing time difference between now() and the input timestamp. The output rounds up to days, hours, minutes, or seconds. 4 days 5 hours returns '4 days' 0 days 4 hours 3 minutes returns '4 hours', etc... """ minutes, seconds = divmo...
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import types def is_object_module(obj): """ Test if the argument is a module object. :param obj: Object :type obj: any :rtype: boolean """ return isinstance(obj, types.ModuleType)
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def convert_to_list(obj): """ receives an object and if type tuple or list, return list. Else return a list containing the one object """ if type(obj) is None: return [] # None implies empty list... if type(obj) is list: return obj if type(obj) is tuple: return [x for x in obj] ...
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def fibi(n: int) -> int: """Fibonacci numbers saving just two previous values >>> fibi(20) 6765 >>> fibi(1) 1 >>> fibi(2) 1 >>> fibi(3) 2 """ if n == 0: return 0 if n == 1: return 1 f_n2, f_n1 = 1, 1 for _ in range(3, n+1): f_n2, f_n1 = f_...
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def interval_overlap_length(i1,i2): """Compute the length of overlap of two intervals. Parameters ---------- i1, i2 : pairs of two floats The two intervals. Returns ------- l : float The length of the overlap between the two intervals. """ (a,b) = i1 (c...
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def create_mock_resource_resp(dm): """Given an instance of Deployment, transforms into resource info as API response.""" return { "name": dm.name, "insertTime": dm.insert_time, "properties": "zone: " + dm.zone, }
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from typing import List def get_characters_from_file(file_path: str) -> List[str]: """ Opens the specified file and retrieves a list of characters. Assuming each character is in one line. Characters can have special characters including a space character. Args: file_path (str): path to th...
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