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https://api.github.com/repos/huggingface/datasets/issues/7068
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https://github.com/huggingface/datasets/pull/7068
2,426,657,434
PR_kwDODunzps52SwXS
7,068
Fix prepare_single_hop_path_and_storage_options
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7068). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update." ]
2024-07-24T05:52:34
2024-07-24T08:54:32
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Fix `_prepare_single_hop_path_and_storage_options`: - Do not pass HF authentication headers and HF user-agent to non-HF HTTP URLs - Do not overwrite passed `storage_options` nested values: - Before, when passed ```DownloadConfig(storage_options={"https": {"client_kwargs": {"raise_for_status": True}}})```, it was overwritten to ```{"https": {"client_kwargs": {"trust_env": True}}}``` - Now, the result combines both: ```{"https": {"client_kwargs": {"trust_env": True, "raise_for_status": True}}}```
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2,425,460,168
I_kwDODunzps6QkZXI
7,067
Convert_to_parquet fails for datasets with multiple configs
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[ "Many users have encountered the same issue, which has caused inconvenience.\r\n\r\nhttps://discuss.huggingface.co/t/convert-to-parquet-fails-for-datasets-with-multiple-configs/86733\r\n" ]
2024-07-23T15:09:33
2024-07-23T15:10:44
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If the dataset has multiple configs, when using the `datasets-cli convert_to_parquet` command to avoid issues with the data viewer caused by loading scripts, the conversion process only successfully converts the data corresponding to the first config. When it starts converting the second config, it throws an error: ``` Traceback (most recent call last): File "/opt/anaconda3/envs/dl/bin/datasets-cli", line 8, in <module> sys.exit(main()) File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/datasets/commands/datasets_cli.py", line 41, in main service.run() File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/datasets/commands/convert_to_parquet.py", line 83, in run dataset.push_to_hub( File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/datasets/dataset_dict.py", line 1713, in push_to_hub api.create_branch(repo_id, branch=revision, token=token, repo_type="dataset", exist_ok=True) File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/huggingface_hub/utils/_validators.py", line 114, in _inner_fn return fn(*args, **kwargs) File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/huggingface_hub/hf_api.py", line 5503, in create_branch hf_raise_for_status(response) File "/opt/anaconda3/envs/dl/lib/python3.10/site-packages/huggingface_hub/utils/_errors.py", line 358, in hf_raise_for_status raise BadRequestError(message, response=response) from e huggingface_hub.utils._errors.BadRequestError: (Request ID: Root=1-669fc665-7c2e80d75f4337496ee95402;731fcdc7-0950-4eec-99cf-ce047b8d003f) Bad request: Invalid reference for a branch: refs/pr/1 ```
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2,425,125,160
I_kwDODunzps6QjHko
7,066
One subset per file in repo ?
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2024-07-23T12:43:59
2024-07-23T12:43:59
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Right now we consider all the files of a dataset to be the same data, e.g. ``` single_subset_dataset/ ├── train0.jsonl ├── train1.jsonl └── train2.jsonl ``` but in cases like this, each file is actually a different subset of the dataset and should be loaded separately ``` many_subsets_dataset/ ├── animals.jsonl ├── trees.jsonl └── metadata.jsonl ``` It would be nice to detect those subsets automatically using a simple heuristic. For example we can group files together if their paths names are the same except some digits ?
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2,424,734,953
I_kwDODunzps6QhoTp
7,065
Cannot get item after loading from disk and then converting to iterable.
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2024-07-23T09:37:56
2024-07-23T09:37:56
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### Describe the bug The dataset generated from local file works fine. ```py root = "/home/data/train" file_list1 = glob(os.path.join(root, "*part1.flac")) file_list2 = glob(os.path.join(root, "*part2.flac")) ds = ( Dataset.from_dict({"part1": file_list1, "part2": file_list2}) .cast_column("part1", Audio(sampling_rate=None, mono=False)) .cast_column("part2", Audio(sampling_rate=None, mono=False)) ) ids = ds.to_iterable_dataset(128) ids = ids.shuffle(buffer_size=10000, seed=42) dataloader = DataLoader(ids, num_workers=4, batch_size=8, persistent_workers=True) for batch in dataloader: break ``` But after saving it to disk and then loading it from disk, I cannot get data as expected. ```py root = "/home/data/train" file_list1 = glob(os.path.join(root, "*part1.flac")) file_list2 = glob(os.path.join(root, "*part2.flac")) ds = ( Dataset.from_dict({"part1": file_list1, "part2": file_list2}) .cast_column("part1", Audio(sampling_rate=None, mono=False)) .cast_column("part2", Audio(sampling_rate=None, mono=False)) ) ds.save_to_disk("./train") ds = datasets.load_from_disk("./train") ids = ds.to_iterable_dataset(128) ids = ids.shuffle(buffer_size=10000, seed=42) dataloader = DataLoader(ids, num_workers=4, batch_size=8, persistent_workers=True) for batch in dataloader: break ``` After a long time waiting, an error occurs: ``` Loading dataset from disk: 100%|█████████████████████████████████████████████████████████████████████████| 165/165 [00:00<00:00, 6422.18it/s] Traceback (most recent call last): File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/dataloader.py", line 1133, in _try_get_data data = self._data_queue.get(timeout=timeout) File "/home/hanzerui/.conda/envs/mss/lib/python3.10/multiprocessing/queues.py", line 113, in get if not self._poll(timeout): File "/home/hanzerui/.conda/envs/mss/lib/python3.10/multiprocessing/connection.py", line 257, in poll return self._poll(timeout) File "/home/hanzerui/.conda/envs/mss/lib/python3.10/multiprocessing/connection.py", line 424, in _poll r = wait([self], timeout) File "/home/hanzerui/.conda/envs/mss/lib/python3.10/multiprocessing/connection.py", line 931, in wait ready = selector.select(timeout) File "/home/hanzerui/.conda/envs/mss/lib/python3.10/selectors.py", line 416, in select fd_event_list = self._selector.poll(timeout) File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/_utils/signal_handling.py", line 66, in handler _error_if_any_worker_fails() RuntimeError: DataLoader worker (pid 3490529) is killed by signal: Killed. The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/hanzerui/.conda/envs/mss/lib/python3.10/runpy.py", line 196, in _run_module_as_main return _run_code(code, main_globals, None, File "/home/hanzerui/.conda/envs/mss/lib/python3.10/runpy.py", line 86, in _run_code exec(code, run_globals) File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/adapter/../../debugpy/launcher/../../debugpy/__main__.py", line 39, in <module> cli.main() File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/adapter/../../debugpy/launcher/../../debugpy/../debugpy/server/cli.py", line 430, in main run() File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/adapter/../../debugpy/launcher/../../debugpy/../debugpy/server/cli.py", line 284, in run_file runpy.run_path(target, run_name="__main__") File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/_vendored/pydevd/_pydevd_bundle/pydevd_runpy.py", line 321, in run_path return _run_module_code(code, init_globals, run_name, File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/_vendored/pydevd/_pydevd_bundle/pydevd_runpy.py", line 135, in _run_module_code _run_code(code, mod_globals, init_globals, File "/home/hanzerui/.vscode-server/extensions/ms-python.debugpy-2024.9.12011011/bundled/libs/debugpy/_vendored/pydevd/_pydevd_bundle/pydevd_runpy.py", line 124, in _run_code exec(code, run_globals) File "/home/hanzerui/workspace/NetEase/test/test_datasets.py", line 60, in <module> for batch in dataloader: File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/dataloader.py", line 631, in __next__ data = self._next_data() File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/dataloader.py", line 1329, in _next_data idx, data = self._get_data() File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/dataloader.py", line 1295, in _get_data success, data = self._try_get_data() File "/home/hanzerui/.conda/envs/mss/lib/python3.10/site-packages/torch/utils/data/dataloader.py", line 1146, in _try_get_data raise RuntimeError(f'DataLoader worker (pid(s) {pids_str}) exited unexpectedly') from e RuntimeError: DataLoader worker (pid(s) 3490529) exited unexpectedly ``` It seems that streaming is not supported by `laod_from_disk`, so does that mean I cannot convert it to iterable? ### Steps to reproduce the bug 1. Create a `Dataset` from local files with `from_dict` 2. Save it to disk with `save_to_disk` 3. Load it from disk with `load_from_disk` 4. Convert to iterable with `to_iterable_dataset` 5. Loop the dataset ### Expected behavior Get items faster than the original dataset generated from dict. ### Environment info - `datasets` version: 2.20.0 - Platform: Linux-6.5.0-41-generic-x86_64-with-glibc2.35 - Python version: 3.10.14 - `huggingface_hub` version: 0.23.2 - PyArrow version: 17.0.0 - Pandas version: 2.2.2 - `fsspec` version: 2024.5.0
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PR_kwDODunzps52Lz2-
7,064
Add `batch` method to `Dataset` class
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[ "Looks good to me ! :)\r\n\r\nyou might want to add the `map` num_proc argument as well, for people who want to make it run faster", "Thanks for the feedback @lhoestq! The last commits include:\r\n- Adding the `num_proc` parameter to `batch`\r\n- Adding tests similar to the one done for `IterableDataset.batch()`\...
2024-07-23T08:40:43
2024-07-24T06:17:45
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This PR introduces a new `batch` method to the `Dataset` class, aligning its functionality with the `IterableDataset.batch()` method (implemented in #7054). The implementation uses as well the existing `map` method for efficient batching of examples. Key changes: - Add `batch` method to `Dataset` class in `arrow_dataset.py` - Utilize `map` method for batching Closes #7063 Once the approach is approved, i will create the tests and update the documentation.
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7,063
Add `batch` method to `Dataset`
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2024-07-23T07:36:59
2024-07-23T07:36:59
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CONTRIBUTOR
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### Feature request Add a `batch` method to the Dataset class, similar to the one recently implemented for `IterableDataset` in PR #7054. ### Motivation A batched iteration speeds up data loading significantly (see e.g. #6279) ### Your contribution I plan to open a PR to implement this.
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7,062
Avoid calling http_head for non-HTTP URLs
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7062). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.", "<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>...
2024-07-23T07:25:09
2024-07-23T14:28:27
2024-07-23T14:21:08
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Avoid calling `http_head` for non-HTTP URLs, by adding and `else` statement. Currently, it makes an unnecessary HTTP call (which adds latency) for non-HTTP protocols, like FTP, S3,... I discovered this while working in an unrelated issue.
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7,061
Custom Dataset | Still Raise Error while handling errors in _generate_examples
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2024-07-22T21:18:12
2024-07-22T21:18:12
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### Describe the bug I follow this [example](https://discuss.huggingface.co/t/error-handling-in-iterabledataset/72827/3) to handle errors in custom dataset. I am writing a dataset script which read jsonl files and i need to handle errors and continue reading files without raising exception and exit the execution. ``` def _generate_examples(self, filepaths): errors=[] id_ = 0 for filepath in filepaths: try: with open(filepath, 'r') as f: for line in f: json_obj = json.loads(line) yield id_, json_obj id_ += 1 except Exception as exc: logger.error(f"error occur at filepath: {filepath}") errors.append(error) ``` seems the logger.error is printed but still exception is raised the the run is exit. ``` Downloading and preparing dataset custom_dataset/default to /home/myuser/.cache/huggingface/datasets/custom_dataset/default-a14cdd566afee0a6/1.0.0/acfcc9fb9c57034b580c4252841 ERROR: datasets_modules.datasets.custom_dataset.acfcc9fb9c57034b580c4252841bb890a5617cbd28678dd4be5e52b81188ad02.custom_dataset: 2024-07-22 10:47:42,167: error occur at filepath: '/home/myuser/ds/corrupted-file.jsonl Traceback (most recent call last): File "/home/myuser/.cache/huggingface/modules/datasets_modules/datasets/custom_dataset/ac..2/custom_dataset.py", line 48, in _generate_examples json_obj = json.loads(line) File "myenv/lib/python3.8/json/__init__.py", line 357, in loads return _default_decoder.decode(s) File "myenv/lib/python3.8/json/decoder.py", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "myenv/lib/python3.8/json/decoder.py", line 353, in raw_decode obj, end = self.scan_once(s, idx) json.decoder.JSONDecodeError: Invalid control character at: line 1 column 4 (char 3) Generating train split: 0 examples [00:06, ? examples/s]> RemoteTraceback: """ Traceback (most recent call last): File "myenv/lib/python3.8/site-packages/datasets/builder.py", line 1637, in _prepare_split_single num_examples, num_bytes = writer.finalize() File "myenv/lib/python3.8/site-packages/datasets/arrow_writer.py", line 594, in finalize raise SchemaInferenceError("Please pass `features` or at least one example when writing data") datasets.arrow_writer.SchemaInferenceError: Please pass `features` or at least one example when writing data The above exception was the direct cause of the following exception: Traceback (most recent call last): File "myenv/lib/python3.8/site-packages/multiprocess/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "myenv/lib/python3.8/site-packages/datasets/utils/py_utils.py", line 1353, in _write_generator_to_queue for i, result in enumerate(func(**kwargs)): File "myenv/lib/python3.8/site-packages/datasets/builder.py", line 1646, in _prepare_split_single raise DatasetGenerationError("An error occurred while generating the dataset") from e datasets.builder.DatasetGenerationError: An error occurred while generating the dataset """ The above exception was the direct cause of the following exception: │ │ │ myenv/lib/python3.8/site-packages/datasets/utils/py_utils. │ │ py:1377 in <listcomp> │ │ │ │ 1374 │ │ │ │ if all(async_result.ready() for async_result in async_results) and queue │ │ 1375 │ │ │ │ │ break │ │ 1376 │ │ # we get the result in case there's an error to raise │ │ ❱ 1377 │ │ [async_result.get() for async_result in async_results] │ │ 1378 │ │ │ │ ╭──────────────────────────────── locals ─────────────────────────────────╮ │ │ │ .0 = <list_iterator object at 0x7f2cc1f0ce20> │ │ │ │ async_result = <multiprocess.pool.ApplyResult object at 0x7f2cc1f79c10> │ │ │ ╰─────────────────────────────────────────────────────────────────────────╯ │ │ │ │ myenv/lib/python3.8/site-packages/multiprocess/pool.py:771 │ │ in get │ │ │ │ 768 │ │ if self._success: │ │ 769 │ │ │ return self._value │ │ 770 │ │ else: │ │ ❱ 771 │ │ │ raise self._value │ │ 772 │ │ │ 773 │ def _set(self, i, obj): │ │ 774 │ │ self._success, self._value = obj │ │ │ │ ╭────────────────────────────── locals ──────────────────────────────╮ │ │ │ self = <multiprocess.pool.ApplyResult object at 0x7f2cc1f79c10> │ │ │ │ timeout = None │ │ │ ╰────────────────────────────────────────────────────────────────────╯ │ DatasetGenerationError: An error occurred while generating the dataset ``` ### Steps to reproduce the bug same as above ### Expected behavior should handle error and continue reading remaining files ### Environment info python 3.9
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WebDataset BuilderConfig
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7060). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update." ]
2024-07-22T15:41:07
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This PR adds `WebDatasetConfig`. Closes #7055
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None values are skipped when reading jsonl in subobjects
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2024-07-22T13:02:42
2024-07-22T13:02:53
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### Describe the bug I have been fighting against my machine since this morning only to find out this is some kind of a bug. When loading a dataset composed of `metadata.jsonl`, if you have nullable values (Optional[str]), they can be ignored by the parser, shifting things around. E.g., let's take this example Here are two version of a same dataset: [not-buggy.tar.gz](https://github.com/user-attachments/files/16333532/not-buggy.tar.gz) [buggy.tar.gz](https://github.com/user-attachments/files/16333553/buggy.tar.gz) ### Steps to reproduce the bug 1. Load the `buggy.tar.gz` dataset 2. Print baseline of `dts = load_dataset("./data")["train"][0]["baselines]` 3. Load the `not-buggy.tar.gz` dataset 4. Print baseline of `dts = load_dataset("./data")["train"][0]["baselines]` ### Expected behavior Both should have 4 baseline entries: 1. Buggy should have None followed by three lists 2. Non-Buggy should have four lists, and the first one should be an empty list. One does not work, 2 works. Despite accepting None in another position than the first one. ### Environment info - `datasets` version: 2.19.1 - Platform: Linux-6.5.0-44-generic-x86_64-with-glibc2.35 - Python version: 3.10.12 - `huggingface_hub` version: 0.23.0 - PyArrow version: 16.1.0 - Pandas version: 2.2.2 - `fsspec` version: 2024.3.1
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New feature type: Document
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2024-07-22T10:49:20
2024-07-22T10:49:20
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CONTRIBUTOR
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It would be useful for PDF. https://github.com/huggingface/dataset-viewer/issues/2991#issuecomment-2242656069
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Update load_hub.mdx
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7,056
Make `BufferShuffledExamplesIterable` resumable
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[ "Oh cool !\r\n\r\nThe time it takes to resume depends on the expected maximum distance in this case right ? Do you know its relationship with $B$ ?\r\n\r\nIn your test it already as high as 15k for $B=1024$, which is ok for text datasets but is maybe not ideal for datasets with heavy samples like audio/image/video ...
2024-07-22T07:50:02
2024-07-22T15:37:01
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CONTRIBUTOR
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This PR aims to implement a resumable `BufferShuffledExamplesIterable`. Instead of saving the entire buffer content, which is very memory-intensive, the newly implemented `BufferShuffledExamplesIterable` saves only the minimal state necessary for recovery, e.g., the random generator states and the state of the first example in the buffer dict. The idea is that since the buffer size is limited, even if the entire buffer is discarded, we can rebuild it as long as the state of the oldest example is recorded. For buffer size $B$, the expected distance between when an example is pushed and when it is yielded is $d = \sum_{k=1}^{\infty} k\frac{1}{B} (1 - \frac{1}{B} )^{k-1} =B$. Simulation experiments support these claims: ```py from random import randint BUFFER_SIZE = 1024 dists = [] buffer = [] for i in range(10000000): if i < BUFFER_SIZE: buffer.append(i) else: index = randint(0, BUFFER_SIZE - 1) dists.append(i - buffer[index]) buffer[index] = i print(f"MIN DIST: {min(dists)}\nMAX DIST: {max(dists)}\nAVG DIST: {sum(dists) / len(dists):.2f}\n") ``` which produces the following output: ```py MIN DIST: 1 MAX DIST: 15136 AVG DIST: 1023.95 ``` The overall time for reconstructing the buffer and recovery should not be too long. The following code mimics the cases of resuming online tokenization by `datasets` and `StatefulDataLoader` under distributed scenarios, ```py import pickle import time from itertools import chain from typing import Any, Dict, List import torch from datasets import load_dataset from torchdata.stateful_dataloader import StatefulDataLoader from tqdm import tqdm from transformers import AutoTokenizer, DataCollatorForLanguageModeling tokenizer = AutoTokenizer.from_pretrained('fla-hub/gla-1.3B-100B') tokenizer.pad_token = tokenizer.eos_token data_collator = DataCollatorForLanguageModeling(tokenizer=tokenizer, mlm=False) torch.manual_seed(42) def tokenize(examples: Dict[str, List[Any]]) -> Dict[str, List[List[int]]]: input_ids = tokenizer(examples['text'])['input_ids'] input_ids = list(chain(*input_ids)) total_length = len(input_ids) chunk_size = 2048 total_length = (total_length // chunk_size) * chunk_size # the last chunk smaller than chunk_size will be discarded return {'input_ids': [input_ids[i: i+chunk_size] for i in range(0, total_length, chunk_size)]} batch_size = 16 num_workers = 5 context_length = 2048 rank = 1 world_size = 32 prefetch_factor = 2 steps = 2048 path = 'fla-hub/slimpajama-test' dataset = load_dataset( path=path, split='train', streaming=True, trust_remote_code=True ) dataset = dataset.map(tokenize, batched=True, remove_columns=next(iter(dataset)).keys()) dataset = dataset.shuffle(seed=42) loader = StatefulDataLoader(dataset=dataset, batch_size=batch_size, collate_fn=data_collator, num_workers=num_workers, persistent_workers=False, prefetch_factor=prefetch_factor) start = time.time() for i, batch in tqdm(enumerate(loader)): if i == 0: print(f'{i}\n{batch["input_ids"]}') if i == steps - 1: print(f'{i}\n{batch["input_ids"]}') state_dict = loader.state_dict() if i == steps: print(f'{i}\n{batch["input_ids"]}') break print(f"{time.time() - start:.2f}s elapsed") print(f"{len(pickle.dumps(state_dict)) / 1024**2:.2f}MB states in total") for worker in state_dict['_snapshot']['_worker_snapshots'].keys(): print(f"{worker} {len(pickle.dumps(state_dict['_snapshot']['_worker_snapshots'][worker])) / 1024**2:.2f}MB") print(state_dict['_snapshot']['_worker_snapshots']['worker_0']['dataset_state']) loader = StatefulDataLoader(dataset=dataset, batch_size=batch_size, collate_fn=data_collator, num_workers=num_workers, persistent_workers=False, prefetch_factor=prefetch_factor) print("Loading state dict") loader.load_state_dict(state_dict) start = time.time() for batch in loader: print(batch['input_ids']) break print(f"{time.time() - start:.2f}s elapsed") ``` and the outputs are ```py 0 tensor([[ 909, 395, 19082, ..., 13088, 16232, 395], [ 601, 28705, 28770, ..., 28733, 923, 288], [21753, 15071, 13977, ..., 9369, 28723, 415], ..., [21763, 28751, 20300, ..., 28781, 28734, 4775], [ 354, 396, 10214, ..., 298, 429, 28770], [ 333, 6149, 28768, ..., 2773, 340, 351]]) 2047 tensor([[28723, 415, 3889, ..., 272, 3065, 2609], [ 403, 3214, 3629, ..., 403, 21163, 16434], [28723, 13, 28749, ..., 28705, 28750, 28734], ..., [ 2778, 2251, 28723, ..., 354, 684, 429], [ 5659, 298, 1038, ..., 5290, 297, 22153], [ 938, 28723, 1537, ..., 9123, 28733, 12154]]) 2048 tensor([[ 769, 278, 12531, ..., 28721, 19309, 28739], [ 415, 23347, 622, ..., 3937, 2426, 28725], [28745, 4345, 28723, ..., 338, 28725, 583], ..., [ 1670, 28709, 5809, ..., 28734, 28760, 393], [ 340, 1277, 624, ..., 325, 28790, 1329], [ 523, 1144, 3409, ..., 359, 359, 17422]]) 65.97s elapsed 0.00MB states in total worker_0 0.00MB worker_1 0.00MB worker_2 0.00MB worker_3 0.00MB worker_4 0.00MB {'ex_iterable': {'ex_iterable': {'shard_idx': 0, 'shard_example_idx': 14000}, 'num_examples_since_previous_state': 166, 'previous_state_example_idx': 7394, 'previous_state': {'shard_idx': 0, 'shard_example_idx': 13000}}, 'num_taken': 6560, 'global_example_idx': 7560, 'buffer_state_dict': {'num_taken': 6560, 'global_example_idx': 356, 'index_offset': 0, 'first_state': {'ex_iterable': {'shard_idx': 0, 'shard_example_idx': 1000}, 'num_examples_since_previous_state': 356, 'previous_state_example_idx': 0, 'previous_state': {'shard_idx': 0, 'shard_example_idx': 0}}, 'bit_generator_state': {'state': {'state': 274674114334540486603088602300644985544, 'inc': 332724090758049132448979897138935081983}, 'bit_generator': 'PCG64', 'has_uint32': 0, 'uinteger': 0}}} Loading state dict tensor([[ 769, 278, 12531, ..., 28721, 19309, 28739], [ 415, 23347, 622, ..., 3937, 2426, 28725], [28745, 4345, 28723, ..., 338, 28725, 583], ..., [ 1670, 28709, 5809, ..., 28734, 28760, 393], [ 340, 1277, 624, ..., 325, 28790, 1329], [ 523, 1144, 3409, ..., 359, 359, 17422]]) 24.60s elapsed ``` Not sure if this PR complies with the `datasets` code style. Looking for your help @lhoestq, also very willing to further improve the code if any suggestions are given.
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7,055
WebDataset with different prefixes are unsupported
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[ "Since `datasets` uses is built on Arrow to store the data, it requires each sample to have the same columns.\r\n\r\nThis can be fixed by specifyign in advance the name of all the possible columns in the `dataset_info` in YAML, and missing values will be `None`", "Thanks. This currently doesn't work for WebDatase...
2024-07-22T01:14:19
2024-07-23T13:58:01
2024-07-23T13:28:46
NONE
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### Describe the bug Consider a WebDataset with multiple images for each item where the number of images may vary: [example](https://huggingface.co/datasets/bigdata-pw/fashion-150k) Due to this [code](https://github.com/huggingface/datasets/blob/87f4c2088854ff33e817e724e75179e9975c1b02/src/datasets/packaged_modules/webdataset/webdataset.py#L76-L80) an error is given. ``` The TAR archives of the dataset should be in WebDataset format, but the files in the archive don't share the same prefix or the same types. ``` The purpose of this check is unclear because PyArrow supports different keys. Removing the check allows the dataset to be loaded and there's no issue when iterating through the dataset. ``` >>> from datasets import load_dataset >>> path = "shards/*.tar" >>> dataset = load_dataset("webdataset", data_files={"train": path}, split="train", streaming=True) Resolving data files: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 152/152 [00:00<00:00, 56458.93it/s] >>> dataset IterableDataset({ features: ['__key__', '__url__', '1.jpg', '2.jpg', '3.jpg', '4.jpg', 'json'], n_shards: 152 }) ``` ### Steps to reproduce the bug ```python from datasets import load_dataset load_dataset("bigdata-pw/fashion-150k") ``` ### Expected behavior Dataset loads without error ### Environment info - `datasets` version: 2.20.0 - Platform: Linux-5.14.0-467.el9.x86_64-x86_64-with-glibc2.34 - Python version: 3.9.19 - `huggingface_hub` version: 0.23.4 - PyArrow version: 17.0.0 - Pandas version: 2.2.2 - `fsspec` version: 2024.5.0
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PR_kwDODunzps514T1f
7,054
Add batching to `IterableDataset`
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[ "Cool ! Thanks for diving into it :)\r\n\r\nYour implementation is great and indeed supports shuffling and batching, you just need to additionally account for state_dict (for dataset [checkpointing+resuming](https://huggingface.co/docs/datasets/main/en/use_with_pytorch#checkpoint-and-resume))\r\n\r\nThat being said...
2024-07-19T10:11:47
2024-07-23T13:25:13
2024-07-23T10:34:28
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I've taken a try at implementing a batched `IterableDataset` as requested in issue #6279. This PR adds a new `BatchedExamplesIterable` class and a `.batch()` method to the `IterableDataset` class. The main changes are: 1. A new `BatchedExamplesIterable` that groups examples into batches. 2. A `.batch()` method for `IterableDataset` to easily create batched versions. 3. Support for shuffling and sharding to work with PyTorch DataLoader and multiple workers. I'm not sure if this is exactly what you had in mind and also have not fully tested it atm, so I'd really appreciate your feedback. Does this seem like it's heading in the right direction? I'm happy to make any changes or explore different approaches if needed. Pinging @lhoestq
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7,053
Datasets.datafiles resolve_pattern `TypeError: can only concatenate tuple (not "str") to tuple`
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[ "Hi,\r\n\r\nThis issue was fixed in `datasets` 2.15.0:\r\n- #6105\r\n\r\nYou will need to update your `datasets`:\r\n```\r\npip install -U datasets\r\n```", "Duplicate of:\r\n- #6100" ]
2024-07-18T13:42:35
2024-07-18T15:17:42
2024-07-18T15:16:18
NONE
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### Describe the bug in data_files.py, line 332, `fs, _, _ = get_fs_token_paths(pattern, storage_options=storage_options)` If we run the code on AWS, as fs.protocol will be a tuple like: `('file', 'local')` So, `isinstance(fs.protocol, str) == False` and `protocol_prefix = fs.protocol + "://" if fs.protocol != "file" else ""` will raise `TypeError: can only concatenate tuple (not "str") to tuple`. ### Steps to reproduce the bug Steps to reproduce: 1. Run on a cloud server like AWS, 2. `import datasets.data_files as datafile` 3. datafile.resolve_pattern('path/to/dataset', '.') 4. `TypeError: can only concatenate tuple (not "str") to tuple` ### Expected behavior Should return path of the dataset, with fs.protocol at the beginning ### Environment info - `datasets` version: 2.14.0 - Platform: Linux-3.10.0-1160.119.1.el7.x86_64-x86_64-with-glibc2.17 - Python version: 3.8.19 - Huggingface_hub version: 0.23.5 - PyArrow version: 16.1.0 - Pandas version: 1.1.5
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7,052
Adding `Music` feature for symbolic music modality (MIDI, abc)
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2024-07-16T17:26:04
2024-07-16T17:26:04
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⚠️ (WIP) ⚠️ ### What this PR does This PR adds a `Music` feature for the symbolic music modality, in particular [MIDI](https://en.wikipedia.org/wiki/Musical_Instrument_Digital_Interface) and [abc](https://en.wikipedia.org/wiki/ABC_notation) files. ### Motivations These two file formats are widely used in the [Music Information Retrieval (MIR)](https://en.wikipedia.org/wiki/Music_information_retrieval) for tasks such as music generation, music transcription, music synthesis or music transcription. Having a dedicated feature in the datasets library would allow to both encourage researchers to share datasets of this modality as well as making them more easily usable for end users, benefitting from the perks of the library. These file formats are supported by [symusic](https://github.com/Yikai-Liao/symusic), a lightweight Python library with C bindings (using nanobind) allowing to efficiently read, write and manipulate them. The library is actively developed, and can in the future also implement other file formats such as [musicXML](https://en.wikipedia.org/wiki/MusicXML). As such, this PR relies on it. The music data can then easily be tokenized with appropriate tokenizers such as [MidiTok](https://github.com/Natooz/MidiTok) or converted to pianorolls matrices by symusic. **Jul 16th 2024:** * the tests for the `Music` feature are currently failing due to non-supported access to the LazyBatch in `test_dataset_with_music_feature_map` and `test_dataset_with_music_feature_map_resample_music` (see TODOs). I am a beginner with pyArrow, I'll take any advice to make this work; * additional tests including the `Music` feature with parquet and WebDataset should be implemented. As of right now, I am waiting for your feedback before taking further steps; * a `MusicFolder` should also be implemented to comply with the usages of the `Image` and `Audio` features, waiting for your feedback too. CCing @lhoestq and @albertvillanova
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How to set_epoch with interleave_datasets?
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[ "This is not possible right now afaik :/\r\n\r\nMaybe we could have something like this ? wdyt ?\r\n\r\n```python\r\nds = interleave_datasets(\r\n [shuffled_dataset_a, dataset_b],\r\n probabilities=probabilities,\r\n stopping_strategy='all_exhausted',\r\n reshuffle_each_iteration=True,\r\n)", "That wo...
2024-07-15T18:24:52
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Let's say I have dataset A which has 100k examples, and dataset B which has 100m examples. I want to train on an interleaved dataset of A+B, with stopping_strategy='all_exhausted' so dataset B doesn't repeat any examples. But every time A is exhausted I want it to be reshuffled (eg. calling set_epoch) Of course I want to interleave as IterableDatasets / streaming mode so B doesn't have to get tokenized completely at the start. How could I achieve this? I was thinking something like, if I wrap dataset A in some new IterableDataset with from_generator() and manually call set_epoch before interleaving it? But I'm not sure how to keep the number of shards in that dataset... Something like ``` dataset_a = load_dataset(...) dataset_b = load_dataset(...) def epoch_shuffled_dataset(ds): # How to make this maintain the number of shards in ds?? for epoch in itertools.count(): ds.set_epoch(epoch) yield from iter(ds) shuffled_dataset_a = IterableDataset.from_generator(epoch_shuffled_dataset, gen_kwargs={'ds': dataset_a}) interleaved = interleave_datasets([shuffled_dataset_a, dataset_b], probs, stopping_strategy='all_exhausted') ```
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add checkpoint and resume title in docs
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7050). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.", "<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>...
2024-07-15T15:38:04
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(minor) just to make it more prominent in the docs page for the soon-to-be-released new torchdata
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Save nparray as list
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[ "In addition, when I use `set_format ` and index the ds, the following error occurs:\r\nthe code\r\n```python\r\nds.set_format(type=\"np\", colums=\"pixel_values\")\r\n```\r\nerror\r\n<img width=\"918\" alt=\"image\" src=\"https://github.com/user-attachments/assets/b28bbff2-20ea-4d28-ab62-b4ed2d944996\">\r\n", ">...
2024-07-15T11:36:11
2024-07-18T11:33:34
2024-07-18T11:33:34
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### Describe the bug When I use the `map` function to convert images into features, datasets saves nparray as a list. Some people use the `set_format` function to convert the column back, but doesn't this lose precision? ### Steps to reproduce the bug the map function ```python def convert_image_to_features(inst, processor, image_dir): image_file = inst["image_url"] file = image_file.split("/")[-1] image_path = os.path.join(image_dir, file) image = Image.open(image_path) image = image.convert("RGBA") inst["pixel_values"] = processor(images=image, return_tensors="np")["pixel_values"] return inst ``` main function ```python map_fun = partial( convert_image_to_features, processor=processor, image_dir=image_dir ) ds = ds.map(map_fun, batched=False, num_proc=20) print(type(ds[0]["pixel_values"]) ``` ### Expected behavior (type < list>) ### Environment info - `datasets` version: 2.16.1 - Platform: Linux-4.19.91-009.ali4000.alios7.x86_64-x86_64-with-glibc2.35 - Python version: 3.11.5 - `huggingface_hub` version: 0.23.4 - PyArrow version: 14.0.2 - Pandas version: 2.1.4 - `fsspec` version: 2023.10.0
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ImportError: numpy.core.multiarray when using `filter`
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[ "Could you please check your `numpy` version?", "I got this issue while using numpy version 2.0. \r\n\r\nI solved it by switching back to numpy 1.26.0 :) ", "We recently added support for numpy 2.0, but it is not released yet.", "Ok I see, thanks! I think we can close this issue for now as switching back to v...
2024-07-15T11:21:04
2024-07-16T10:11:25
2024-07-16T10:11:25
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### Describe the bug I can't apply the filter method on my dataset. ### Steps to reproduce the bug The following snippet generates a bug: ```python from datasets import load_dataset ami = load_dataset('kamilakesbi/ami', 'ihm') ami['train'].filter( lambda example: example["file_name"] == 'EN2001a' ) ``` I get the following error: `ImportError: numpy.core.multiarray failed to import (auto-generated because you didn't call 'numpy.import_array()' after cimporting numpy; use '<void>numpy._import_array' to disable if you are certain you don't need it).` ### Expected behavior It should work properly! ### Environment info - `datasets` version: 2.20.0 - Platform: Linux-5.15.0-67-generic-x86_64-with-glibc2.35 - Python version: 3.10.6 - `huggingface_hub` version: 0.23.4 - PyArrow version: 16.1.0 - Pandas version: 2.2.2 - `fsspec` version: 2024.5.0
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Save Dataset as Sharded Parquet
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[ "To anyone else who finds themselves in this predicament, it's possible to read the parquet file in the same way that datasets writes it, and then manually break it into pieces. Although, you need a couple of magic options (`thrift_*`) to deal with the huge metadata, otherwise pyarrow immediately crashes.\r\n```pyt...
2024-07-12T23:47:51
2024-07-17T12:07:08
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### Feature request `to_parquet` currently saves the dataset as one massive, monolithic parquet file, rather than as several small parquet files. It should shard large datasets automatically. ### Motivation This default behavior makes me very sad because a program I ran for 6 hours saved its results using `to_parquet`, putting the entire billion+ row dataset into a 171 GB *single shard parquet file* which pyarrow, apache spark, etc. all cannot work with without completely exhausting the memory of my system. I was previously able to work with larger-than-memory parquet files, but not this one. I *assume* the reason why this is happening is because it is a single shard. Making sharding the default behavior puts datasets in parity with other frameworks, such as spark, which automatically shard when a large dataset is saved as parquet. ### Your contribution I could change the logic here https://github.com/huggingface/datasets/blob/bf6f41e94d9b2f1c620cf937a2e85e5754a8b960/src/datasets/io/parquet.py#L109-L158 to use `pyarrow.dataset.write_dataset`, which seems to support sharding, or periodically open new files. We would only shard if the user passed in a path rather than file handle.
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Support librosa and numpy 2.0 for Python 3.10
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7046). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.", "<details>\n<summary>Show benchmarks</summary>\n\nPyArrow==8.0.0\n\n<details>\n<summary>...
2024-07-12T12:42:47
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Support librosa and numpy 2.0 for Python 3.10 by installing soxr 0.4.0b1 pre-release: - https://github.com/dofuuz/python-soxr/releases/tag/v0.4.0b1 - https://github.com/dofuuz/python-soxr/issues/28
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Fix tensorflow min version depending on Python version
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Fix tensorflow min version depending on Python version. Related to: - #6991
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Mark tests that require librosa
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Mark tests that require `librosa`. Note that `librosa` is an optional dependency (installed with `audio` option) and we should be able to test environments without that library installed. This is the case if we want to test Numpy 2.0, which is currently incompatible with `librosa` due to its dependency on `soxr`: - https://github.com/dofuuz/python-soxr/issues/28
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