Datasets:

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viral-data-safety

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filtering-reference-data

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viral-data-safety 3

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 14 new columns ({'sample type', 'virus tax id', 'KEGG GENOME', 'source organism', 'pmid', 'refseq id', 'host name', 'DISEASE', 'host lineage', 'virus lineage', 'KEGG DISEASE', 'host tax id', 'evidence', 'virus name'}) and 3 missing columns ({'2', 'Bacteria', 'cellular organisms'}).

This happened while the csv dataset builder was generating data using

hf://datasets/viral-data-safety/filtering-reference-data/virushostdb.tsv (at revision 2bf1ee584e325bf5e8414539f5ba19f09638f5b9), [/tmp/hf-datasets-cache/medium/datasets/54773533845603-config-parquet-and-info-viral-data-safety-filteri-a100505b/hub/datasets--viral-data-safety--filtering-reference-data/snapshots/2bf1ee584e325bf5e8414539f5ba19f09638f5b9/taxid2lineage_full_VH.tsv (origin=hf://datasets/viral-data-safety/filtering-reference-data@2bf1ee584e325bf5e8414539f5ba19f09638f5b9/taxid2lineage_full_VH.tsv), /tmp/hf-datasets-cache/medium/datasets/54773533845603-config-parquet-and-info-viral-data-safety-filteri-a100505b/hub/datasets--viral-data-safety--filtering-reference-data/snapshots/2bf1ee584e325bf5e8414539f5ba19f09638f5b9/virushostdb.tsv (origin=hf://datasets/viral-data-safety/filtering-reference-data@2bf1ee584e325bf5e8414539f5ba19f09638f5b9/virushostdb.tsv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1800, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2321, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2249, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              virus tax id: int64
              virus name: string
              virus lineage: string
              refseq id: string
              KEGG GENOME: string
              KEGG DISEASE: string
              DISEASE: string
              host tax id: double
              host name: string
              host lineage: string
              pmid: string
              evidence: string
              sample type: string
              source organism: double
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1950
              to
              {'2': Value('int64'), 'Bacteria': Value('string'), 'cellular organisms': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 882, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 943, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1802, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 14 new columns ({'sample type', 'virus tax id', 'KEGG GENOME', 'source organism', 'pmid', 'refseq id', 'host name', 'DISEASE', 'host lineage', 'virus lineage', 'KEGG DISEASE', 'host tax id', 'evidence', 'virus name'}) and 3 missing columns ({'2', 'Bacteria', 'cellular organisms'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/viral-data-safety/filtering-reference-data/virushostdb.tsv (at revision 2bf1ee584e325bf5e8414539f5ba19f09638f5b9), [/tmp/hf-datasets-cache/medium/datasets/54773533845603-config-parquet-and-info-viral-data-safety-filteri-a100505b/hub/datasets--viral-data-safety--filtering-reference-data/snapshots/2bf1ee584e325bf5e8414539f5ba19f09638f5b9/taxid2lineage_full_VH.tsv (origin=hf://datasets/viral-data-safety/filtering-reference-data@2bf1ee584e325bf5e8414539f5ba19f09638f5b9/taxid2lineage_full_VH.tsv), /tmp/hf-datasets-cache/medium/datasets/54773533845603-config-parquet-and-info-viral-data-safety-filteri-a100505b/hub/datasets--viral-data-safety--filtering-reference-data/snapshots/2bf1ee584e325bf5e8414539f5ba19f09638f5b9/virushostdb.tsv (origin=hf://datasets/viral-data-safety/filtering-reference-data@2bf1ee584e325bf5e8414539f5ba19f09638f5b9/virushostdb.tsv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)